LOC_Os01g28690

Expression Profile

RGAP LOCUS ID LOC_Os01g28690
RAP-DB ID Os01g0383900
Function nucleoporin autopeptidase domain containing protein, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 7

2) CELLO Prediction
localization Nuclear
score 3.145

3) NUCPRED Prediction
localization Non Nuclear
score 0.26

4) Y-Loc Prediction
localization Chloroplast
score 9
confidence value 0.49
Number Of Software Predicting Nucleus 1
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) APIP12
Function assigned as per literature
Subcellular localization as per literature NA
Cells used for localization experiment
NUCLEAR or Not Nuclear
PMID
Reference of localization
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.078
NLS score -0.47
Protein Sequence >LOC_Os01g28690.2 protein
MMSSSSSWSTPSFGLARESSSLLFTPGLVQHMGPNPSSSWSTPAHPVSDSPTFSFPTPFFCEPAKGSRVYAYTKTADDLPHKHTLSISAMPAYISKSHEE
LRHEDYQRGDKGGDGLQKIMVNSAPVPPMPMLSSVGAPVNMINSSQPAFSLKSKTNFSTPFSPAATADQQSAQLQFSTQNHYYTSNPFWPAPIGLVRPCS
STGLQSSTPGLNCTGITSFPFLPTKQPSVGTQSSTLFPTTFVHPSVELQKNASTHCASSQTAPCTTHGGILFGTAANTVSLTTSSTEPTTSSLGPTSCPA
TRHGDAPSTGFACQENVFSNSAAYTSTINADVPTNTIDLLLPNNIRLVRLRFSSTNDGNGSVASEVHCHHDAKTSETPISLCIYPGENQELIIKSMVQPA
KSHTGKQSSPTGGHPDDQSGRSKVCNSAAGLPSSGPGENQKGNSSAGHKTPKSPLAAPRCEAIAESVLPRLYSADYYTVPSIVELAVGERDEPGYCSHVK
GFTVGRHGYGSVKFDGETDWRRLDIGSIVEFNEREIIVYRDVSNTPPVGQELNKPAEVTLLNVKCVEQKNGLQFTEGPAVDRYKEILVQWTKDHGAEFVS
FDAAKGEWKFRVKNFNM

GO Analysis
1
GO Category Biological Process
GO Term transport
2
GO Category Molecular Function
GO Term protein binding
3
GO Category Cellular comBiological Processonent
GO Term nuclear envelope
4
GO Category Molecular Function
GO Term transporter activity
Presence of Splice variants No