LOC_Os01g26920
| RGAP LOCUS ID | LOC_Os01g26920 | ||||
| RAP-DB ID | Os01g0367100 | ||||
| Function | expressed protein | ||||
Sub-cellular Localization Predictions |
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1) WoLF-PSORT Prediction |
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| localization | chlo | ||||
| score | 12 | ||||
2) CELLO Prediction |
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| localization | Mitochondrial | ||||
| score | 1.048 | ||||
3) NUCPRED Prediction |
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| localization | Non Nuclear | ||||
| score | 0.09 | ||||
4) Y-Loc Prediction |
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| localization | Chloroplast | ||||
| score | 9 | ||||
| confidence value | 0.78 | ||||
| Number Of Software Predicting Nucleus | 0 | ||||
| Seed Specific | No | ||||
| Transcription factor category | |||||
Experimental evidence for subcellular localization |
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| Published gene name (updated 1 January 2020) | PHD1 | ||||
| Function assigned as per literature | PHD1 plays an important role in supplying sufficient galactolipids to thylakoid membranes for proper chloroplast biogenesis and photosynthetic activity | ||||
| Subcellular localization as per literature | Chloroplasts | ||||
| Cells used for localization experiment | rice shoot protoplasts | ||||
| NUCLEAR or Not Nuclear | NOT NUCLEAR | ||||
| PMID | 21829379 | ||||
| Reference of localization | https://journals.plos.org/plosgenetics/article?id=10.1371/journal.pgen.1002196 | ||||
| Is Subcellular localization evidence by author available ? | No | ||||
Sequence Analysis |
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| Number of PAT4 | 1 | ||||
| Number of PAT7 | 0 | ||||
| Number of Bipartite | 0 | ||||
| Basic residues % | 0.118 | ||||
| NLS score | -0.22 | ||||
| Protein Sequence | >LOC_Os01g26920.1 protein MGGAAVSSLLATPTPTSRPRPVSTTTAPFSVNLSTAAARAPRLLLLSRRPRPRPAAAVLGVSDDTGVKMAGSDIVGKNDLLIVGPGVLGRLVAEKWQEEH PGCKVFGQTASTDHHNELSNIGIIPSLKGSTFPQKVPYVIFCAPPSRSDDYPGDVRVAASNWTGEGSFVFTSSTALYDCSDNELCNEDCPSVPIGRSPRT DVLLKAENVVLEAGGCVLRLAGLYKIDRGAHFFWLRKGTLDTRPDHIINQIHYEDAASLAIAIMKKGHRGRIFLGCDNKPLSRQEIMDSVNRSGKFDTKF QGFTGTDGPLGKKMENSRTRSEIGWEPKYPSFTEFLGLDS |
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GO Analysis |
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| 1 |
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| Presence of Splice variants | YES | ||||