LOC_Os01g26160

Expression Profile

RGAP LOCUS ID LOC_Os01g26160
RAP-DB ID Os01g0363900
Function exportin 1, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 5

2) CELLO Prediction
localization PlasmaMembrane
score 3.31

3) NUCPRED Prediction
localization Non Nuclear
score 0.58

4) Y-Loc Prediction
localization Cytoplasm
score 55
confidence value 0.13
Number Of Software Predicting Nucleus 1
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) CRD1
Function assigned as per literature CRD1 is an Xpo1 domain protein and regulates miRNA accumulation and crown root development in rice.
Subcellular localization as per literature Nucleus and cytoplasm
Cells used for localization experiment root cells of CRD1-GFP seedling
NUCLEAR or Not Nuclear NUCLEAR
PMID 31257621
Reference of localization https://onlinelibrary.wiley.com/doi/abs/10.1111/tpj.14445
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 1
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.093
NLS score -0.22
Protein Sequence >LOC_Os01g26160.1 protein
MAADPAVASAVAAISAVMDWRSSPDARSAAFAYLESVKTGDVRALANTSFLLVRKDQSSEVRLHGFKMLQHLVRLRWEELSVAERNEFANLTVNLIPEVV
GPHEEWALKSQTAALVAEVVRREGVALWNTLLPSIVSLSNNGPIEAELVAMILRWLPEDITVHNEDLEGDRRRALLRGLTESLPQILPLLYSLLEKHFVA
ALSAHTNQQMELAKQHVGTITAVLNAANAYAEWAPVTDLAKYGLIHGCGSLFSYSDFRLHACEFFKIICQRKRPLDVAIVEYDAAMSNIFQLLMNIAQDF
LVRSKMQPNVIDVNEYEFAMCICETMVALGSSNMQCILADVARTLHFLQQMLEYYQHYKITLHFQSLLFWLVVLREPSKAKSVARVSSDTPAAGNSASTG
GGSTEREKKGVSVLITDEMYSTILDVTFKRMLKKSTSASSGLLELWSEELEGKSDFCNYRAKLLDLIKVIASQRPGITATSIVQRINIVFGDANEATKSS
QDLDAMEGAQLGLEAVVSAIFDGSSDYSKIDQDTKFQIHRIFEGLLQQLLSLKWSQPNLAVIHGHYLDSLGPFLRHYPDAVACIVNKLFEILTSLPITIQ
DPSNNFRQARLQICSSFIRISRAADKALLPHMKNIADTMAYLQGEGRLLRAEHNHLCEAFLVMASSAGIQQQQEVLAWLLEPINKMWTQVEWQNAYLSDP
SGLTHMFADSQFMWSIYHNITLFEKALKRGGSKKSASAPQALATTVVTANLHPMCSHLPWILPPLLRLLRCIHMLWAEPFSQSLAGEVKAAKSMTVAEQT
SLLGETNKLTKGQVASADGLLDVQREGESKENTIRNWLRGIRDSGYNVIGLSASLGDPFFRCIEGSSITAALMENVQAMEFRHLRQLIHLVIIPLVKYCP
PELWRMWISNLLQPLFVHCQQALDFSWSSLLREGRAKVPDNFGNLSGSDLKVEVMEEKLLRDLTREVCSVLWVLASPGLNSGLPSLEQLGPANRINSSLK
DLELFVSSSITGFLMLNVSTAVPALRITVEVFSWTDSEAVTKIIPFCGALIHLAVATNRAELSQFVAKDLFSSILHGLSVELNSITSSELVGLCREIYIY
LSDRDPAPRQVLLSLPHMKQEDLLAFDESLSKTASPKDQKLLMRSLLLLASGNKLRALVGQKATNVITNVTTRNRSSAARHGLSAEEDDHIGLAALSS

GO Analysis
1
GO Category Cellular comBiological Processonent
GO Term nucleus
2
GO Category Biological Process
GO Term transport
3
GO Category Biological Process
GO Term regulation of gene expression, epigenetic
4
GO Category Biological Process
GO Term cellular process
5
GO Category Molecular Function
GO Term transporter activity
6
GO Category Cellular comBiological Processonent
GO Term nuclear envelope
7
GO Category Biological Process
GO Term multicellular organismal development
8
GO Category Biological Process
GO Term anatomical structure morphogenesis
9
GO Category Biological Process
GO Term flower development
10
GO Category Molecular Function
GO Term protein binding
Presence of Splice variants YES