LOC_Os01g24460

Expression Profile

RGAP LOCUS ID LOC_Os01g24460
RAP-DB ID None
Function histone-like transcription factor and archaeal histone, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 9.5

2) CELLO Prediction
localization Nuclear
score 3.38

3) NUCPRED Prediction
localization Non Nuclear
score 0.55

4) Y-Loc Prediction
localization Nuclear
score 97.68
confidence value 0.69
Number Of Software Predicting Nucleus 3
Seed Specific Yes
Transcription factor category CCAAT/NF_YC

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsNF-YC10
Function assigned as per literature OsNF-YC10 regulates the grains size and shape by influencing the cell proliferation of spikelet hulls
Subcellular localization as per literature Nucleus
Cells used for localization experiment Rice protoplasts
NUCLEAR or Not Nuclear NUCLEAR
PMID 30824000
Reference of localization https://www.sciencedirect.com/science/article/pii/S0168945218306940?via%3Dihub
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 1
Number of Bipartite 0
Basic residues % 0.072
NLS score -0.22
Protein Sequence >LOC_Os01g24460.1 protein
MKQTLDVHRSLRPPMPMAQQQMDEFWRDRQKEIEMTKDFSEHMIPMARLKKIVSSQKGNMMMTFDMPAFLSKMCELFVQELAARAWACAQSHNRCIILDM
DIAEAVASTESYDFLVDILHNHSVKQKSTPCSSTKRCRLVDQPSTSHIPHQHLLPQFAPTYTLAIPITPSLMPLISQCTPSSFPSLPQEKFPLMAPTPIV
NRSMLFINNIARGLGLQGNNINAVANNNILDNIVGCSSPAVLASMMNPALLGPSGAPLNPPNSQSYNCTMDIINSNDACGSNNSSVIVANQANIAPSGHF
YPIALQSSCSTFLHSNNNDTITAILEGVDISDIMHVTSDVDAATKVFSGQEEQHEKETNVEWHHQNEIYESIDIRIINATTRDGNKCSISWDELGMADDS
LLDNFLEELQVRKDDVSDTRIAFNKDPFLDDAVLSNPSTSNGNK

GO Analysis
1
GO Category Molecular Function
GO Term DNA binding
2
GO Category Cellular comBiological Processonent
GO Term nucleus
3
GO Category Biological Process
GO Term response to endogenous stimulus
4
GO Category Biological Process
GO Term signal transduction
5
GO Category Biological Process
GO Term biosynthetic process
6
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
7
GO Category Molecular Function
GO Term sequence-specific DNA binding transcription factor activity
Presence of Splice variants No