LOC_Os01g23620

Expression Profile

RGAP LOCUS ID LOC_Os01g23620
RAP-DB ID Os01g0338000
Function miro, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization cyto
score 8.5

2) CELLO Prediction
localization Cytoplasmic
score 1.832

3) NUCPRED Prediction
localization Non Nuclear
score 0

4) Y-Loc Prediction
localization Cytoplasm
score 99
confidence value 0.97
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsSar1a
Function assigned as per literature OsSar1a/b/c play a crucial role in storage proteins exiting from the ER, with functional redundancy in rice endosperm, and glutelin and α-globulin transported together from the ER to the Golgi apparatus by a pathway mediated by coat protein complex II
Subcellular localization as per literature ERES, at the ER, and in the cytosol.
Cells used for localization experiment rice protoplasts
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 23682119
Reference of localization https://academic.oup.com/jxb/article/64/10/2831/541842
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.13
NLS score -0.47
Protein Sequence >LOC_Os01g23620.1 protein
MFLWDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQHPTSEELSIGKIKFKAFDLGGHQIARRVWKDYYAKVDAVVYLVDAYDK
ERFAESKKELDALLSDDSLAAVPFLILGNKIDIPYAASEEELRYHLGLSNFTTGKGKVSLGESNVRPLEVFMCSVVRKMGYGDGFKWVSQYIK

GO Analysis
1
GO Category Biological Process
GO Term transport
2
GO Category Biological Process
GO Term cellular process
3
GO Category Molecular Function
GO Term nucleotide binding
4
GO Category Cellular comBiological Processonent
GO Term plasma membrane
Presence of Splice variants No