LOC_Os01g19694

Expression Profile

RGAP LOCUS ID LOC_Os01g19694
RAP-DB ID Os01g0302500
Function Homeobox domain containing protein, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 13

2) CELLO Prediction
localization Nuclear
score 3.066

3) NUCPRED Prediction
localization Non Nuclear
score 0.64

4) Y-Loc Prediction
localization Nuclear
score 99.95
confidence value 0.9
Number Of Software Predicting Nucleus 3
Seed Specific No
Transcription factor category HB/TALE

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OSH6
Function assigned as per literature OSH6 may be involved in developmental mechanism of bract differentiation, especially at the basal nodes of panicles
Subcellular localization as per literature Nucleus and cytoplasm
Cells used for localization experiment onion epidermal cells
NUCLEAR or Not Nuclear NUCLEAR
PMID 17624547
Reference of localization https://link.springer.com/article/10.1007%2Fs00425-007-0576-1
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 3
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.123
NLS score 0.34
Protein Sequence >LOC_Os01g19694.1 protein
MEDLYSIHPGISRVGGAASEASGVGVVVGGGGGSSSSDLTELMKAQIAGHPRYPTLLSAYIECRKVGAPPEVASLLKEIGRERRAGGGGGGAGQIGVDPE
LDEFMEAYCRVLVRYKEELSRPFDEAASFLSSIQTQLSNLCSGATSPPATTATHSDEMVGSSDEDQCSGETDMLDIGQEQSSRLADHELKEMLLKKYSGC
LSRLRSEFLKKRKKGKLPKDARSALLEWWNTHYRWPYPTEEDKLRLAARTGLDPKQINNWFINQRKRHWKPSDGMRFALMEGVAGGSSGTTLYFDTGTIG
P

GO Analysis
1
GO Category Molecular Function
GO Term DNA binding
2
GO Category Cellular comBiological Processonent
GO Term nucleus
3
GO Category Molecular Function
GO Term protein binding
4
GO Category Biological Process
GO Term biosynthetic process
5
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
6
GO Category Biological Process
GO Term multicellular organismal development
7
GO Category Molecular Function
GO Term sequence-specific DNA binding transcription factor activity
Presence of Splice variants No