LOC_Os01g18240

Expression Profile

RGAP LOCUS ID LOC_Os01g18240
RAP-DB ID Os01g0285300
Function MYB family transcription factor, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 12

2) CELLO Prediction
localization Nuclear
score 4.625

3) NUCPRED Prediction
localization Non Nuclear
score 0.6

4) Y-Loc Prediction
localization Nuclear
score 99.99
confidence value 0.92
Number Of Software Predicting Nucleus 3
Seed Specific No
Transcription factor category MYB

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) MYB61|OsMYB61
Function assigned as per literature MYB61 is involved in secondary wall cellulose synthesis in rice.
Subcellular localization as per literature Nucleus
Cells used for localization experiment Rice protoplasts
NUCLEAR or Not Nuclear NUCLEAR
PMID 26002868
Reference of localization http://www.plantcell.org/content/27/6/1681.long
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.098
NLS score -0.47
Protein Sequence >LOC_Os01g18240.1 protein
MGRHSCCYKQKLRKGLWSPEEDEKLMNHITKHGHGCWSTVPKLAGLQRCGKSCRLRWINYLRPDLKRGAFSQEEEDLIVELHAVLGNRWSQIATRLPGRT
DNEIKNLWNSCIKKKLRQKGIDPNTHKPLAEVDRSKATPTISNDRTSESSDVDPSSGVALHNLSHLLSETAQSSELLPVKVTKPRTQAPGLARLKVPPKE
LFLDQLTSGHENLPSCRSSGPIPNFPFQQLLCYNNDFNSMDVGNRNSLWYNQNESSSSTISTVMPPVSPSTLSTSTGLNPSPDNANSRGTGIHNSQFYWD
TNNPSSSSSTGSSGNNGLGFELQSTSSLLETNIFPWSDLAPEKDSQAQLEEELKWPDLLHGTFSEMPAPMQNLSQSLYEDVVKAESQFNMEGLCAAWSQN
LLPQQHLPVVSDMYDKDLQRMSLSFENI

GO Analysis
1
GO Category Biological Process
GO Term reproduction
2
GO Category Biological Process
GO Term post-embryonic development
3
GO Category Biological Process
GO Term response to endogenous stimulus
4
GO Category Molecular Function
GO Term DNA binding
5
GO Category Biological Process
GO Term biosynthetic process
6
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
7
GO Category Biological Process
GO Term cellular process
8
GO Category Molecular Function
GO Term sequence-specific DNA binding transcription factor activity
Presence of Splice variants No