LOC_Os01g17330

Expression Profile

RGAP LOCUS ID LOC_Os01g17330
RAP-DB ID Os01g0280500
Function eukaryotic translation initiation factor 6, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization cyto
score 5

2) CELLO Prediction
localization PlasmaMembrane
score 1.321

3) NUCPRED Prediction
localization Non Nuclear
score 0

4) Y-Loc Prediction
localization Cytoplasm
score 78
confidence value 0.26
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) Os-eIF6;2
Function assigned as per literature
Subcellular localization as per literature NA
Cells used for localization experiment
NUCLEAR or Not Nuclear
PMID
Reference of localization
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.071
NLS score -0.47
Protein Sequence >LOC_Os01g17330.2 protein
MIFFFKNRFCIAGVRFENSSEIGVFARLTNAYCVLPDGGAENFFSVFESELADVVPVVRTSIGGTRIIGRMCVGNKNGLLLPHTTTDQELQHLKNSLPDQ
VVVQRIEERLSALGNCVACNDHVALTHPDLDQGTEEIISDVLGVEVFRQTIAGNILVGSFCAFSNKGGLVHPQTSVEDQAELSTLLEVPLAAGSINRGSE
VVAAGMAVNDWAAFCGADTTATELSVVESVFRLRDGRPGALGADMSRSLVVSSYL

GO Analysis
1
GO Category Molecular Function
GO Term binding
2
GO Category Cellular comBiological Processonent
GO Term nucleus
3
GO Category Biological Process
GO Term translation
4
GO Category Molecular Function
GO Term translation factor activity, nucleic acid binding
5
GO Category Cellular comBiological Processonent
GO Term nucleolus
6
GO Category Cellular comBiological Processonent
GO Term cytosol
7
GO Category Biological Process
GO Term reproduction
8
GO Category Biological Process
GO Term post-embryonic development
9
GO Category Biological Process
GO Term embryo development
10
GO Category Biological Process
GO Term response to endogenous stimulus
11
GO Category Biological Process
GO Term cellular process
Presence of Splice variants YES