| RGAP LOCUS ID |
LOC_Os01g17170 |
| RAP-DB ID |
Os01g0279100 |
| Function |
magnesium-protoporphyrin IX monomethyl ester cyclase,chloroplast precursor, putative, expressed |
Sub-cellular Localization
Predictions |
1) WoLF-PSORT Prediction |
| localization |
chlo |
| score |
12.5 |
2) CELLO
Prediction
|
| localization |
Cytoplasmic |
| score |
1.233 |
3) NUCPRED
Prediction
|
| localization |
Non Nuclear |
| score |
0.5 |
4) Y-Loc
Prediction
|
| localization |
Chloroplast |
| score |
9 |
| confidence value |
0.89 |
| Number Of Software Predicting Nucleus |
0 |
| Seed Specific |
No |
| Transcription factor category |
|
Experimental evidence for
subcellular localization |
| Published gene name (updated 1 January 2020) |
PNZIP|OsCRD1|YL-1 |
| Function assigned as per literature |
Yellow-Leaf 1 (YL-1) is involved in chlorophyll biosynthesis in rice |
| Subcellular localization as per literature |
Chloroplasts |
| Cells used for localization experiment |
Rice protoplasts |
| NUCLEAR or Not Nuclear |
NOT NUCLEAR |
| PMID |
28558018 |
| Reference of localization |
https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0177989 |
| Is Subcellular localization evidence by author available ?
|
No |
Sequence Analysis
|
| Number of PAT4 |
1 |
| Number of PAT7 |
3 |
| Number of Bipartite |
0 |
| Basic residues % |
0.14 |
| NLS score |
0.81 |
| Protein Sequence |
>LOC_Os01g17170.1 protein
MASSAMELSLLNPAAMRGLSAAKPRVVSSRRIVRFRVASSAAAPPAAKPGTPKKRGKTEIQETLLTPRFYTTDFDEMERLFNAEINKQLNQEEFDALLQE
FKTDYNQTHFVRNPEFKAAADKMEGPLRQIFVEFLERSCTAEFSGFLLYKELGRRLKKTNPVVAEIFSLMSRDEARHAGFLNKGLSDFNLALDLGFLTKA
RKYTFFKPKFIFYATYLSEKIGYWRYITIFRHLKANPEYQVYPIFKYFENWCQDENRHGDFFSALLKAQPQFLNDWKAKLWSRFFCLSVYVTMYLNDCQR
TTFYEGIGLDTKEFDMHVIIETNRTTARIFPAVLDVENPEFKRKLDRMVEINKKIIAIGESDDIPLVKNLKRIPHVAALVSEIIAAYLMPPIESGSVDFA
EFEPQLVY |
GO Analysis |
| 1 |
| GO Category |
Molecular Function |
| GO Term |
DNA binding |
|
| 2 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
membrane |
|
| 3 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
plastid |
|
| 4 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
thylakoid |
|
| 5 |
| GO Category |
Biological Process |
| GO Term |
metabolic process |
|
| 6 |
| GO Category |
Molecular Function |
| GO Term |
catalytic activity |
|
| 7 |
| GO Category |
Biological Process |
| GO Term |
biosynthetic process |
|
| 8 |
| GO Category |
Biological Process |
| GO Term |
cellular process |
|
| 9 |
| GO Category |
Biological Process |
| GO Term |
photosynthesis |
|
| Presence of Splice variants |
YES |
