LOC_Os01g16810

Expression Profile

RGAP LOCUS ID LOC_Os01g16810
RAP-DB ID Os01g0274800
Function MYB family transcription factor, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 14

2) CELLO Prediction
localization Nuclear
score 3.64

3) NUCPRED Prediction
localization Non Nuclear
score 0.45

4) Y-Loc Prediction
localization Nuclear
score 99.97
confidence value 0.99
Number Of Software Predicting Nucleus 3
Seed Specific No
Transcription factor category MYB

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) CSA
Function assigned as per literature Carbon Starved Anther (CSA) encodes a putative R2R3 MYB-type transcription factor that is involved in regulating sugar partitioning during male reproductive development
Subcellular localization as per literature Nucleus
Cells used for localization experiment Onion epidermal cells
NUCLEAR or Not Nuclear NUCLEAR
PMID 20305120
Reference of localization http://www.plantcell.org/content/22/3/672.long
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 3
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.098
NLS score 0.28
Protein Sequence >LOC_Os01g16810.1 protein
MAHEMMGGFFGHPPPPPATAAVGEEEDEVVEETEEGGHGGGVQGKLCARGHWRPAEDAKLKDLVAQYGPQNWNLIAEKLDGRSGKSCRLRWFNQLDPRIN
RRAFTEEEEERLMAAHRAYGNKWALIARLFPGRTDNAVKNHWHVLMARRHREQSGAFRRRKPSSSSASPAPAPAPPPPPQPVVALHHHHHRYSQQYSGYS
GAAESDESASTCTTDLSLSSGSAAAAAAAAAAANIPCCFYQSTPRASSSSTAACRAPRVAAAADTVAFFPGAGYDFAAAPHAMAPAAASTFAPSARSAFS
APAGRGEPPGAVDQRGGAQATTDSHTIPFFDFLGVGAT

GO Analysis
1
GO Category Molecular Function
GO Term DNA binding
2
GO Category Biological Process
GO Term biosynthetic process
3
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
4
GO Category Biological Process
GO Term anatomical structure morphogenesis
5
GO Category Biological Process
GO Term multicellular organismal development
6
GO Category Molecular Function
GO Term sequence-specific DNA binding transcription factor activity
Presence of Splice variants No