| RGAP LOCUS ID |
LOC_Os01g16090 |
| RAP-DB ID |
Os01g0265800 |
| Function |
RNA binding protein, putative, expressed |
Sub-cellular Localization
Predictions |
1) WoLF-PSORT Prediction |
| localization |
chlo |
| score |
6 |
2) CELLO
Prediction
|
| localization |
Nuclear |
| score |
2.287 |
3) NUCPRED
Prediction
|
| localization |
Non Nuclear |
| score |
0.28 |
4) Y-Loc
Prediction
|
| localization |
Nuclear |
| score |
99.64 |
| confidence value |
0.72 |
| Number Of Software Predicting Nucleus |
2 |
| Seed Specific |
No |
| Transcription factor category |
|
Experimental evidence for
subcellular localization |
| Published gene name (updated 1 January 2020) |
RBP-P |
| Function assigned as per literature |
RBP-P has role in glutelin and prolamine mRNA localization and in the regulation of genes important for plant growth and development through its RNA binding activity and cooperative regulation with interacting proteins |
| Subcellular localization as per literature |
RBP-P interacted with RBP-L and RBP-208 in Nucleus |
| Cells used for localization experiment |
BY-2 protoplasts |
| NUCLEAR or Not Nuclear |
NUCLEAR |
| PMID |
30190374 |
| Reference of localization |
http://www.plantcell.org/content/plantcell/early/2018/09/06/tpc.18.00321.full.pdf |
| Is Subcellular localization evidence by author available ?
|
No |
Sequence Analysis
|
| Number of PAT4 |
1 |
| Number of PAT7 |
0 |
| Number of Bipartite |
0 |
| Basic residues % |
0.086 |
| NLS score |
-0.16 |
| Protein Sequence |
>LOC_Os01g16090.1 protein
MGKKRKLDSKSPAAARSAAARAAAAAAAAAAAAAVAEPSSQPEALAEDPAPSSQPLGLSSEGAGERMMSREAGGGEEEEVEEVEVEEEVEVDEDEDGEGE
GEEEEEAAERDADSIQALLNSFPKDQLVELLSAAALSHEDVLTAVHRAADADPALRKIFVHGLGWDATAETLTEAFSAYGEIEDLRVVTDRATGKCKGYG
FILFSRRSGARAALREPQKKIGNRTTACQLASVGPVPPGGMATNPAPAVAPAPAQLALPPVSEYTQRKIFVSNVGADIDPQKLLQFFSKYGEIEEGPLGL
DKVTGKPKGFALFVYKTLDSAKKALQEPHKQFEGVVLHCQKAIDGPKPNKGGGLGGLYGAGTSGGRKGAGGYGAHSHSLPGAAVGGHVMPSPVSSLTSLP
GVAGGPGVNPALGQALTAILASQGGGLGLNNILGVGANGSGLPNPGASAGLGSSGLPGMPGAGGYLGGYGGGGGYGSTPPGGPGRNYMGH |
GO Analysis |
| 1 |
| GO Category |
Molecular Function |
| GO Term |
RNA binding |
|
| 2 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
nucleus |
|
| 3 |
| GO Category |
Biological Process |
| GO Term |
response to endogenous stimulus |
|
| 4 |
| GO Category |
Biological Process |
| GO Term |
signal transduction |
|
| 5 |
| GO Category |
Biological Process |
| GO Term |
multicellular organismal development |
|
| 6 |
| GO Category |
Biological Process |
| GO Term |
cell death |
|
| 7 |
| GO Category |
Biological Process |
| GO Term |
biosynthetic process |
|
| 8 |
| GO Category |
Biological Process |
| GO Term |
cellular process |
|
| 9 |
| GO Category |
Molecular Function |
| GO Term |
protein binding |
|
| 10 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
cytosol |
|
| 11 |
| GO Category |
Biological Process |
| GO Term |
response to stress |
|
| 12 |
| GO Category |
Biological Process |
| GO Term |
nucleobase, nucleoside, nucleotide and nucleic acid metabolic process |
|
| Presence of Splice variants |
No |
