| RGAP LOCUS ID |
LOC_Os01g16040 |
| RAP-DB ID |
Os01g0265200 |
| Function |
mitochondrial carrier protein, putative, expressed |
Sub-cellular Localization
Predictions |
1) WoLF-PSORT Prediction |
| localization |
plas |
| score |
7.5 |
2) CELLO
Prediction
|
| localization |
Mitochondrial |
| score |
2.285 |
3) NUCPRED
Prediction
|
| localization |
Non Nuclear |
| score |
0.07 |
4) Y-Loc
Prediction
|
| localization |
Mitochondrion |
| score |
|
| confidence value |
0.42 |
| Number Of Software Predicting Nucleus |
0 |
| Seed Specific |
No |
| Transcription factor category |
|
Experimental evidence for
subcellular localization |
| Published gene name (updated 1 January 2020) |
OsPAPST1 |
| Function assigned as per literature |
PAPST1 may act as a 3'-phosphoadenosine 5'-phosphosulfate carrier that has been shown to act as a retrograde signal between chloroplasts and the nucleus |
| Subcellular localization as per literature |
Plastids |
| Cells used for localization experiment |
onion (Allium cepa) and tobacco (Nicotiana tabacum) epidermis |
| NUCLEAR or Not Nuclear |
NOT NUCLEAR |
| PMID |
23411694 |
| Reference of localization |
http://www.plantphysiol.org/content/161/4/2036.long |
| Is Subcellular localization evidence by author available ?
|
No |
Sequence Analysis
|
| Number of PAT4 |
0 |
| Number of PAT7 |
0 |
| Number of Bipartite |
0 |
| Basic residues % |
0.118 |
| NLS score |
-0.47 |
| Protein Sequence |
>LOC_Os01g16040.1 protein
MSHRRVDAAACDSWRPPPTPPPPHARRALALRVGGGGGGPAFASLTVREGGGGGEEGEVGEGKGKQQQLPAAGVLVRHPLAMLALVPNAVALFAAGAAAG
AVAKTITAPLDRVKLLMQTHSVRVVGESTKKGIGFLEAIAEIGKEEGLKGYWKGNLPQVIRIVPYSAVQLFSYEVYKKFFRRKDGELTVFGRLAAGACAG
MTSTLVTYPLDVLRLRLAVQSGHSTMSQVAMNMLRDEGLASFYGGLGPSLIGIAPYIAVNFCVFDLMKKSVPEKYKSRPETSLATALLSATFATLMCYPL
DTVRRQMQMKGSPYNTVLDAIPGIVERDGLIGLYRGFVPNALKNLPNSSIKLTAFDTVKTLISTGQKELEKLMQENQEKMS |
GO Analysis |
| 1 |
| GO Category |
Biological Process |
| GO Term |
transport |
|
| 2 |
| GO Category |
Biological Process |
| GO Term |
cellular process |
|
| 3 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
plastid |
|
| 4 |
| GO Category |
Molecular Function |
| GO Term |
binding |
|
| 5 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
membrane |
|
| 6 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
thylakoid |
|
| 7 |
| GO Category |
Biological Process |
| GO Term |
generation of precursor metabolites and energy |
|
| 8 |
| GO Category |
Biological Process |
| GO Term |
protein metabolic process |
|
| 9 |
| GO Category |
Biological Process |
| GO Term |
photosynthesis |
|
| 10 |
| GO Category |
Molecular Function |
| GO Term |
transporter activity |
|
| 11 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
mitochondrion |
|
| 12 |
| GO Category |
Biological Process |
| GO Term |
response to abiotic stimulus |
|
| Presence of Splice variants |
No |
