LOC_Os01g15780

Expression Profile

RGAP LOCUS ID LOC_Os01g15780
RAP-DB ID Os01g0262600
Function glycosyl transferase, group 1 domain containing protein, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 6

2) CELLO Prediction
localization Mitochondrial
score 3.067

3) NUCPRED Prediction
localization Non Nuclear
score 0.03

4) Y-Loc Prediction
localization Chloroplast
score 9
confidence value 0.5
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsGT1
Function assigned as per literature OsGT1 is essential for intine construction and pollen maturation in rice
Subcellular localization as per literature Golgi apparatus
Cells used for localization experiment Mesophyll protoplasts and onion epidermal cells
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 23263792
Reference of localization http://www.plantphysiol.org/content/161/2/663.long
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.112
NLS score -0.47
Protein Sequence >LOC_Os01g15780.1 protein
MAKPSSAAAASGGGRGPAHHHRTRLLLLLLLAVAACASTAGFLLCGAMLDPCDVDARRGSGSSAAAVATTRTGAVAGNPLEFMRSKLMLLVSHELSLSGG
PLLLMELAFLLRQVGSQVVWITNQRSEETNDVTYSLEHKMLSHGVQVLPARGHEAIDTALKADLVILNTAVAGKWLDAVLNDHVPQVLPKILWWIHEMRG
HYFKLEYVKHLPLVAGAMIDSHTTAEYWKTRTHDRLKIQMPQTYVVHLGNSKELMEVAEDNVARRVLREHIREFLGVRSEDLVFAIINSVSRGKGQDLFL
QAFYQGVQLIEQKKLKVPTMHAVVVGSDINAQTKFETQLRDFAVKNGIQDRVHFVNKTLAVAPYLAATDVLVQNSQARGECFGRITIEAMAFKLPVLGTA
AGGTTEIVVDGSTGLLHPAGKEGVAPLAKNMVRLASHEEDRVSMGRKGYGRVKEMFMEHHMAGRIAAVLQEVLKKSREHSHS

GO Analysis
1
GO Category Molecular Function
GO Term transferase activity
2
GO Category Biological Process
GO Term metabolic process
3
GO Category Biological Process
GO Term biosynthetic process
4
GO Category Cellular comBiological Processonent
GO Term Golgi apparatus
Presence of Splice variants YES