LOC_Os01g15640

Expression Profile

RGAP LOCUS ID LOC_Os01g15640
RAP-DB ID Os01g0261200
Function no apical meristem protein, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization cyto
score 5

2) CELLO Prediction
localization Nuclear
score 2.454

3) NUCPRED Prediction
localization Non Nuclear
score 0.47

4) Y-Loc Prediction
localization Nuclear
score 65.9
confidence value 0.86
Number Of Software Predicting Nucleus 2
Seed Specific No
Transcription factor category NAC

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsNTL3
Function assigned as per literature OsNTL3 plays important role in thermotolerance
Subcellular localization as per literature OsNTL3 relocates from plasma membrane to nucleus in response to heat stress
Cells used for localization experiment root cells in rice
NUCLEAR or Not Nuclear NUCLEAR
PMID 31733092
Reference of localization https://onlinelibrary.wiley.com/doi/full/10.1111/pbi.13297
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.106
NLS score -0.47
Protein Sequence >LOC_Os01g15640.1 protein
MESLRDMVLPPGFGFHPKDTELISHYLKKKIHGQKIEYEIIPEVDIYKHEPWDLPAKCDVPTQDNKWHFFAARDRKYPNGSRSNRATVAGYWKSTGKDRA
IKMGKQTIGTKKTLVFHEGRPPTGRRTEWIMHEYYIDERECQACPDMKDAYVLCRITKRNDWIPGNGNELDNSDPHPEPYDAPPSVISTEQLNPAAEPVV
GVEAAPVTVAEPDGVTTSAITANIPSPSDDINLDDWLNELFDPFFDPEQSLASADLSPDEQNVESSNVGALAPKVEQDYSSPNENVVDDTEYLLPEDVYN
ILHPGTDDFNMLQNPLDQYPIQYATDVWSGIQKEELWSPQANAEPSQSNEAADNGIIRRYRSMKTPETSVPQFKGKTQAKMRVGINKMATSSSESINQTI
KFENSGRLVEHQKNQAHDVASTKRSDAGKPSTELSSNRGFLRGIRNAFAGCSDARWNMILVAGFAIGVAVVALHIGQRLGLSQRDQQHT

GO Analysis
1
GO Category Biological Process
GO Term biosynthetic process
2
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
3
GO Category Biological Process
GO Term multicellular organismal development
4
GO Category Molecular Function
GO Term sequence-specific DNA binding transcription factor activity
Presence of Splice variants No