LOC_Os01g15520

Expression Profile

RGAP LOCUS ID LOC_Os01g15520
RAP-DB ID Os01g0259900
Function expressed protein

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 14

2) CELLO Prediction
localization Nuclear
score 4.331

3) NUCPRED Prediction
localization Non Nuclear
score 0.83

4) Y-Loc Prediction
localization Nuclear
score 99.85
confidence value 0.97
Number Of Software Predicting Nucleus 3
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) SAD1L
Function assigned as per literature Ineracts with MED4 and controls various aspects of plant development
Subcellular localization as per literature SAD1 interacted with OsMED4 in the nucleus
Cells used for localization experiment Nicotiana benthamiana leaves
NUCLEAR or Not Nuclear NUCLEAR
PMID 25404280
Reference of localization https://onlinelibrary.wiley.com/doi/epdf/10.1111/tpj.12725
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 1
Number of Bipartite 0
Basic residues % 0.145
NLS score -0.22
Protein Sequence >LOC_Os01g15520.1 protein
MRSYEPGPAFEENSEEAMLDISQTESTELWLIQWPLNQLDASDFHGQELTLKLHRDGKLSSLESSSGKSYDLVSFAAQQPDATVFLPSGPEAKAVGKIAR
RVSLVRYPDPEELEKPGLGSLTPSSKKSAGSSKKTRSRFTSGSKNRSSQGSAQSLGQQSAEPAHKHNQKRKDESSLGHSNVSGKSAEGSQVRGGDSGTTS
EVPQTPVEKSKKKNKKVRIAE

GO Analysis
1
GO Category Molecular Function
GO Term molecular_function
2
GO Category Cellular comBiological Processonent
GO Term nucleolus
3
GO Category Biological Process
GO Term biological_process
Presence of Splice variants No