LOC_Os01g15020

Expression Profile

RGAP LOCUS ID LOC_Os01g15020
RAP-DB ID Os01g0254100
Function lissencephaly type-1-like homology motif, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 6

2) CELLO Prediction
localization Nuclear
score 1.123

3) NUCPRED Prediction
localization Non Nuclear
score 0.57

4) Y-Loc Prediction
localization Nuclear
score 80.69
confidence value 0.55
Number Of Software Predicting Nucleus 2
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) ASPR1
Function assigned as per literature
Subcellular localization as per literature NA
Cells used for localization experiment
NUCLEAR or Not Nuclear
PMID
Reference of localization
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.104
NLS score -0.47
Protein Sequence >LOC_Os01g15020.1 protein
MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEEKVHAGEWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDRHDRAKAVDILVKD
LKVFSTFNEELYKEITQLLTLENFRENEQLSKYGDTKSARSIMLIELKKLIEANPLFREKLVFPTLKASRLRTLINQSLNWQHQLCKNPRPNPDIKTLFT
DHTCTPPNGARASPVSVPLAAVPKAGGTYPPLTAHTPFQPPPAGPSLAGWMANAAAATSSVPSAVVAASSLPVPPNQAVPIMKRPTITDYQSAESEQLMK
RLRPSGHGVDEATYPAPIPQPLWSVEDLPRTVACTLSQGSSVTSMDFHPTRHTLLLVGSTNGEITLWEVGMRERLFSKPFKIWDIQACSPQFQSVAKESS
ISINRVTWSPDGDLIGVAFAKHLIHLHAYQQPNETRQVLEIDAHSGAVNDIAFSRPNKQLCVVTCGDDRLIKVWDMHGQKLFSFEGHEAPVYSICPHHKE
SIQFIFSTSLDGKIKAWLYDHMGSRVDYDAPGKWCTTMLYSADGTRLFSCGTSKDGDSYLVEWNESEGSIKRTYSGFRKKSAGVGVVQFDTAQNHILAAG
EDNQIKFWDVDNTTMLSSTEADGGLPGLPRLRFNKEGNLLAVTTVDNGFKILANADGLRTLRAFGNRPFEAFRSQYEASSMKVSGAPVVAGISPNIGRMD
HIDRNSPAKPSPIMNGGDPASRSIDIKPRISEERPDKAKPWELMEVLNAQQCRVATMPETPDQASKVVRLLYTNSGVGLLALGSNAIQRLWKWARNDQNP
SGKATANVVPQHWQPNSGLVMQNDTADTNPEDAVPCIALSKNDSYVMSACGGKVSLFNMMTFKVMTTFMPPPPASTFLAFHPQDNNIIAIGMEDSTIHIY
NVRVDEVKTRLKGHQRRITGLAFSNNLQILVSSGADAQLCVWATDTWEKKKSVAIQMPAGKTPSGDTWVQFNSDWSRLLVVHETQLAIYDASKMERIYQW
IPQDALSAPISHASYSRNSQLVFAAFTDGNIGIFDVENLRLRCRIAPPAYLSSAAINSNPSVYPLVVAAHPQESNQFAVGLSDGSVKVIEPLESEGKWGT
TPPTENGVPNGRTSTSSATSNPAADQIQR

GO Analysis
1
GO Category Cellular comBiological Processonent
GO Term cell
2
GO Category Biological Process
GO Term reproduction
3
GO Category Biological Process
GO Term anatomical structure morphogenesis
4
GO Category Biological Process
GO Term post-embryonic development
5
GO Category Biological Process
GO Term embryo development
6
GO Category Molecular Function
GO Term protein binding
Presence of Splice variants YES