LOC_Os01g13540

Expression Profile

RGAP LOCUS ID LOC_Os01g13540
RAP-DB ID Os01g0236700
Function NIN, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 14

2) CELLO Prediction
localization Nuclear
score 2.725

3) NUCPRED Prediction
localization Non Nuclear
score 0.46

4) Y-Loc Prediction
localization Chloroplast
score 7
confidence value 0.17
Number Of Software Predicting Nucleus 2
Seed Specific No
Transcription factor category RWP-RK/Nin-like

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsNIN-like3
Function assigned as per literature OsNIN-like3 is a transcription factor and acts as potential regulator of OsNHX1 gene expression in salt tolerant rice genotype
Subcellular localization as per literature nucleus, but also in the cytosol
Cells used for localization experiment onion epidermal cells
NUCLEAR or Not Nuclear NUCLEAR
PMID 27766460
Reference of localization https://link.springer.com/content/pdf/10.1007%2Fs11103-016-0547-7.pdf
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 2
Number of Bipartite 0
Basic residues % 0.097
NLS score 0.3
Protein Sequence >LOC_Os01g13540.1 protein
MEVDPSSSLPGAGEGGGGGIGGGGGDLWPFDSLTTSLLFSSVSASPQPLPASSSSWLTPPSPLWLFDERQLLPLDMGAPAAPATAPPAEAAAVVEEVHRT
RSGNSDTTSKRVDQINSKWQFHLSIDDNTDSSCLFKERLTQALRYFKESTDQHLLVQVWAPVKSGDRYVLTTSGQPFVLDQQSIGLLQYRAVSMMYMFSV
DGENAGELGLPGRVYKQKVPEWTPNVQYYSSTEYPRLNHAISYNVHGTVALPVFDPSVQNCIAVVELIMTSKKINYAGEVDKVCKALEAVNLKSTEILDH
PNVQICNEGRQSALVEILEILTVVCEEHKLPLAQTWVPCKYRSVLAHGGGVKKSCLSFDGSCMGEVCMSTSDVAFHVIDAHMWGFRDACVEHHLQKGQGV
SGKAFIYRRPCFSKDISQFCKLEYPLVHYARMFGLAGCFAICLQSMYTGDDDYILEFFLPPNCRNEDDQNALLESILARMKKCLRTLKVVGNGDTNEVCL
QISNVLIIETEDLKTNVHFENSEGCFRESPESNGSQRVHEVDNDGNKVSIMSERHLLADDNSQNNGASVGRPNGSGASDSLHKSNKPPERRRGKAEKTIS
LDVLQQYFSGSLKNAAKSLGVCPTTMKRICRQHGISRWPSRKINKVNRSLSKLKQVIESVQGSDAAFNLTSITGPLPIPVGPSSDSQNLEKASPNKVAEL
SNLAVEGDRDSSLQKPIENDNLAILMSQQGFIDANNNLQLEADKASHSRSSSGEGSINSRTSEASCHGSPANQTFVCKPIASTFAEPQLIPEAFTKEPFQ
EPALPLSRMLIEDSGSSKDLKNLFTSAVDQPFLARSSNLALMQNSGTVTIKASFKEDIVRFRFPCSGSVTALKDEVAKRLRMDVGMFDIKYLDDDHEWVK
LACNADLEECMEISGSHVIRLLVSDVAAHLGSSCGSSG

GO Analysis
1
GO Category Biological Process
GO Term biosynthetic process
2
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
3
GO Category Molecular Function
GO Term sequence-specific DNA binding transcription factor activity
Presence of Splice variants No