LOC_Os01g13460

Expression Profile

RGAP LOCUS ID LOC_Os01g13460
RAP-DB ID Os01g0235700
Function helix-loop-helix DNA-binding domain containing protein, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 11

2) CELLO Prediction
localization Nuclear
score 2.228

3) NUCPRED Prediction
localization Non Nuclear
score 0.47

4) Y-Loc Prediction
localization Nuclear
score 100
confidence value 1
Number Of Software Predicting Nucleus 3
Seed Specific No
Transcription factor category bHLH

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsMYL2
Function assigned as per literature Role in the inductive production of sakuranetin during defence responses in rice
Subcellular localization as per literature OsMYL2 was localized along with OsMYC2 in the Nucleus
Cells used for localization experiment onion epidermal cells
NUCLEAR or Not Nuclear NUCLEAR
PMID 28067270
Reference of localization https://www.nature.com/articles/srep40175
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 3
Number of PAT7 1
Number of Bipartite 0
Basic residues % 0.117
NLS score 0.71
Protein Sequence >LOC_Os01g13460.1 protein
MVMKMEADEDGANGGTGGTWTDEDRALTASVLGTDAFAYLTKGGGAISEGLVAASLPVDLQNRLQELVESDRPGAGWNYAIFWQLSRTKSGDLVLGWGDG
SCREPHDGEMGPAASAGSDEAKQRMRKRVLQRLHSAFGGVDEEDYAPGIDQVTDTEMFFLASMYFAFPRRAGGPGQVFAAGVPLWIPNTERNVFPANYCY
RGYLANAAGFRTIVLVPFETGVLELGSMQQVAESSDTLQTIRSVFAGAIGNKAGVQRHEGSGPTDKSPGLAKIFGKDLNLGRPSAGPGTGVSEADERSWE
QRTGGGSSLLPNVQRGLQNFTWSQARGLNSHQQKFGNGILIVSNEATPRNNGGVDSSTATQFQLQKAPPLQKLPQLQKSHQLVKPQQLVSQQQLQPQAPR
QIDFSAGTSSKPGVLTKKPAGIDGDGAEVDGLCKDEGPPPALEDRRPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGD
AITYITDLQKKLKEMEVERERLIESGMIDPRDRTPRPEVDIQVVQDEVLVRVMSPMESHPVRAIFQAFEEAEVHAGESKITSNNGTAVHSFIIKCPGAEQ
QTREKVIAAMSRVMNSG

GO Analysis
1
GO Category Molecular Function
GO Term DNA binding
2
GO Category Biological Process
GO Term biosynthetic process
3
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
4
GO Category Molecular Function
GO Term sequence-specific DNA binding transcription factor activity
Presence of Splice variants No