LOC_Os01g12890

Expression Profile

RGAP LOCUS ID LOC_Os01g12890
RAP-DB ID Os01g0229300
Function expressed protein

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 14

2) CELLO Prediction
localization Nuclear
score 4.569

3) NUCPRED Prediction
localization Non Nuclear
score 0.98

4) Y-Loc Prediction
localization Nuclear
score 92.86
confidence value 0.76
Number Of Software Predicting Nucleus 3
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) CCP1|DFO1|EMF1|OsEMF1
Function assigned as per literature CCP1 plays an important role in palea develop-ment through maintaining H3K27me3-mediated epigenetic silence of the carpel identity-specifying gene OsMADS58
Subcellular localization as per literature Nucleus
Cells used for localization experiment Onion and tobacco epidermal cells
NUCLEAR or Not Nuclear NUCLEAR
PMID 25647350
Reference of localization https://onlinelibrary.wiley.com/doi/epdf/10.1111/tpj.12784
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 7
Number of PAT7 2
Number of Bipartite 4
Basic residues % 0.126
NLS score 4.3
Protein Sequence >LOC_Os01g12890.1 protein
MEIVAVDQEGARVVGTNCMLARGGTGAVAPVLELTATPRQDAAAEAGVDEPAQHQCEHFSIRGYVALLQKKDPKFCSLSRIFHDQKKCDEHKASSSPFSV
AKFRRWDCSKCLDKLKTSDNGTAPRTLPAKQNGTSDGCSITFVRSTFVPASVGSQKVSPSTQSSQGKNADRSTLPKSVQEGNDSKCNAPSGKNGAAEANT
DSPMKDLQGPAQNYDVAANVSEDNTSVDVGALPEVPQITWHIEVNGADQPPSTPKLSEVVLKRNEDENGKTEETLVAEQCNLTKDPNPMSGKERDQVAEQ
CNLTKDPKPVSGQKCEQICNEPCEEVVLKRSSKSKRKTDKKLMKKQQHSKKRTAQADVSDAKLCRRKPKKVRLLSEIINANQVEDSRSDEVHRENAADPC
EDDRSTIPVPMEVSMDIPVSNHTVGEDGLKSSKNKTKRKYSDVVDDGSSLMNWLNGKKKRTGSVHHTVAHPAGNLSNKKVTPTASTQHDDENDTENGLDT
NMHKTDVCQHVSEISTQRCSSKGKTAGLSKGKTHSAASTKYGGESTRNGQNIHVLSAEDQCQMETENSVLSHSAKVSPAEHDIQIMSDLHEQSLPKKKKK
QKLEVTREKQTMIDDIPMDIVELLAKNQHERQLMTETDCSDINRIQSKTTADDDCVIVAAKDGSDYASSVFDTNSQQKSLASQSTQKELQGHLALTTQES
PHPQNFQSTQEQQTHLRMEEMVTIAASSPLFSHHDDQYIAEAPTEHWGRKDAKKLTWEQFKATTRNSPAATCGAQFRPGIQAVDLTSTHVMGSSSNYASR
QPVIAPLDRYAERAVNQVHARNFPSTIATMEASKLCDRRNAGQVVLYPKESMPATHLLRMMDPSTLASFPNYGTSSRNQMESQLHNSQYAHNQYKGSTST
SYGSNLNGKIPLTFEDLSRHQLHDLHRPLRPHPRVGVLGSLLQKEIANWSENCGTQSGYKLGVSTGITSHQMNRKEHFEALNSGMFSAKWNALQLGSVSS
SADFLSARNSIAQSWTRGKGKMVHPLDRFVRQDICITNKNPADFTTISNDNEYMDYR

GO Analysis
1
GO Category Biological Process
GO Term biosynthetic process
2
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
3
GO Category Biological Process
GO Term cellular component organization
4
GO Category Biological Process
GO Term protein modification process
5
GO Category Molecular Function
GO Term RNA binding
6
GO Category Cellular comBiological Processonent
GO Term nucleus
7
GO Category Biological Process
GO Term multicellular organismal development
8
GO Category Molecular Function
GO Term DNA binding
9
GO Category Biological Process
GO Term flower development
10
GO Category Molecular Function
GO Term protein binding
Presence of Splice variants No