LOC_Os01g12830

Expression Profile

RGAP LOCUS ID LOC_Os01g12830
RAP-DB ID Os01g0228600
Function erythronate-4-phosphate dehydrogenase domain containing protein, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 5

2) CELLO Prediction
localization Cytoplasmic
score 2.772

3) NUCPRED Prediction
localization Non Nuclear
score 0.07

4) Y-Loc Prediction
localization Cytoplasm
score 69
confidence value 0.22
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsHPR2
Function assigned as per literature OsHPR2 is involved in photorespiratory metabolism in rice
Subcellular localization as per literature Cytosol and on the surface of the nucleus
Cells used for localization experiment Rice protoplasts
NUCLEAR or Not Nuclear NUCLEAR
PMID 24401104
Reference of localization https://onlinelibrary.wiley.com/doi/pdf/10.1111/jipb.12125
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.111
NLS score -0.47
Protein Sequence >LOC_Os01g12830.2 protein
MDSLGVLLVAPMNAYLEQELDRRCRLFRLWESPADRRDDYLRAHASSIRAVVPYALQGVDAAMIDALPSLEIVSSFSVGIDRVDLDACLRRGVRVTNTPD
VLTDDVADLAVGLAIAALRKIPQADRYVRAGKWKSKGDFTLTTRFSGKRVGILGLGRIGLAVAKRAEAFDCPISYHSRSEKPFPKYKFYPNVVDLAANCD
VLVVACSLNPETRHIVNRKVIDALGPEGVLINIARGAHVDEPELISALLEKRLGGAGLDVFEDEPFAPEQLFELDNVVLVPHVGSDTEETCWAMADLVLQ
NLEAHALNQPLLTPVI

GO Analysis
1
GO Category Molecular Function
GO Term catalytic activity
2
GO Category Biological Process
GO Term metabolic process
3
GO Category Molecular Function
GO Term nucleotide binding
4
GO Category Molecular Function
GO Term binding
5
GO Category Cellular comBiological Processonent
GO Term cytosol
Presence of Splice variants YES