LOC_Os01g12710

Expression Profile

RGAP LOCUS ID LOC_Os01g12710
RAP-DB ID Os01g0227100
Function oxidoreductase, short chain dehydrogenase/reductase family domain containing protein, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 9

2) CELLO Prediction
localization Chloroplast
score 2.063

3) NUCPRED Prediction
localization Non Nuclear
score 0.35

4) Y-Loc Prediction
localization Chloroplast
score 8
confidence value 0.41
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) NYC1
Function assigned as per literature NYC1 plays essential roles in the regulation of LHCII and thylakoid membrane degradation during senescence
Subcellular localization as per literature Chloroplasts
Cells used for localization experiment Onion epidermal cells
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 17416733
Reference of localization http://www.plantcell.org/content/19/4/1362.long
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 2
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.121
NLS score 0.15
Protein Sequence >LOC_Os01g12710.1 protein
MAAAAVVHLSVHGRLRRSPELHARPYHRPSLLRCRAFKQEADNGGEEASSSPPPPTTAEARRRRKGPLYKLKAAIQGLAGSRSAAAEAYGGEYQRAVEKA
EEIFFSVATQVGRYVITMMSSGVVLGVGFQLSGGDSQMNTLIWYSWLGGVIIGTMIGANSVLEEHCKAGPRNVVITGSTRGLGKALAREFLLSGDRVVIA
SRSPESVLQTINELEENIQEGLSVAKKKQREILLHAKVVGTSCDVCKPEDVKKLVNFAKDELGSIDIWINNAGTNKGFRPLVNFSDEDISQIVSTNLVGS
LLCTREAMNVMQHQQKGGHVFNMDGAGSGGSSTPLTAVYGSTKCGLRQFQASLLKESRRSKVGVHTASPGMVLTDLLLSGSSLRNKQMFNLICELPETVA
RTLVPRMRVVKGSGKAINYLTPPRILLALVTAWVRRGRWFDEEGRAVYAAEADRIRNWAESRARFSFTDAMEMYTENTWVSVFSLSVVCAFIILSSSGGP
LPGT

GO Analysis
1
GO Category Biological Process
GO Term protein metabolic process
2
GO Category Biological Process
GO Term catabolic process
3
GO Category Biological Process
GO Term cellular process
4
GO Category Molecular Function
GO Term catalytic activity
5
GO Category Biological Process
GO Term metabolic process
6
GO Category Cellular comBiological Processonent
GO Term plastid
Presence of Splice variants YES