LOC_Os01g12160

Expression Profile

RGAP LOCUS ID LOC_Os01g12160
RAP-DB ID Os01g0221100
Function OsGH3.3 - Probable indole-3-acetic acid-amido synthetase, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 4

2) CELLO Prediction
localization Mitochondrial
score 1.213

3) NUCPRED Prediction
localization Non Nuclear
score 0.11

4) Y-Loc Prediction
localization Nuclear
score 55.56
confidence value 0.16
Number Of Software Predicting Nucleus 1
Seed Specific Yes
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsJAR2|OsGH3.3|OsGH3-3
Function assigned as per literature
Subcellular localization as per literature NA
Cells used for localization experiment
NUCLEAR or Not Nuclear
PMID
Reference of localization
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.105
NLS score -0.47
Protein Sequence >LOC_Os01g12160.1 protein
MLEKKATRSTRVDGVSGEAVIEEFERVTRDAANVQRETLRRILAENGGVEYLRGLGLAGATDPATFRARVPLATHADLEPYIDRIADGDASPVLTAKPAT
SISLSSGTTQGKRKYLLFNEELVKSTMQIYRISYAFRNREFPVENGKALQFIYSSRETRTKGGLTATTATTNVYRSEEFKATMRDIQSQCCSPDEVIFGP
DFAQSLYCHLLAGLLAAGDVQIVSATFAHSVVLAFQTFERAWEDLCADIRRGEVSPSRVTSPAVRRAMAALLAAPNPGLADEVARKCAALSNWYGVIPAL
WPNARYVYGIMTGSMEHYVKKLRHYAGGLPLVAAEYGASEGWVGANVEPGTPPERATFTVLPDIAYFEFIPLKPVAGDGGYAEAEPVGLTEVAAGELYEV
VMTTFAGLYRYRLGDVVKVAGFYNATPKLKFVCRRNLMLSINIDKNSEQDLQLAVDAAARAVLAGEKLEVVDYTSHADVSSDPGHYVVFLELNAADPAAV
DGDVMQACCDELDRAFADAGYVGSRKSGAIAPLELRVLQRGTFQKVLRHYLSLGAPVSQFKSPRCVSRSNSGVLQILAGCTVNVFFSSAYD

GO Analysis
1
GO Category Biological Process
GO Term protein modification process
2
GO Category Biological Process
GO Term response to endogenous stimulus
3
GO Category Biological Process
GO Term cellular process
4
GO Category Molecular Function
GO Term nucleotide binding
5
GO Category Biological Process
GO Term response to stress
6
GO Category Biological Process
GO Term response to biotic stimulus
7
GO Category Biological Process
GO Term biological_process
8
GO Category Biological Process
GO Term post-embryonic development
9
GO Category Biological Process
GO Term response to abiotic stimulus
10
GO Category Cellular comBiological Processonent
GO Term cytoplasm
11
GO Category Biological Process
GO Term response to external stimulus
12
GO Category Biological Process
GO Term signal transduction
13
GO Category Molecular Function
GO Term transferase activity
14
GO Category Molecular Function
GO Term catalytic activity
15
GO Category Biological Process
GO Term metabolic process
16
GO Category Cellular comBiological Processonent
GO Term vacuole
17
GO Category Molecular Function
GO Term protein binding
18
GO Category Biological Process
GO Term lipid metabolic process
Presence of Splice variants YES