LOC_Os01g11040

Expression Profile

RGAP LOCUS ID LOC_Os01g11040
RAP-DB ID Os01g0208600
Function SCAR-like protein 2, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 12

2) CELLO Prediction
localization Nuclear
score 4.072

3) NUCPRED Prediction
localization Non Nuclear
score 0.72

4) Y-Loc Prediction
localization Nuclear
score 98.4
confidence value 0.97
Number Of Software Predicting Nucleus 3
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) ES1|TUT1|OsSCAR1
Function assigned as per literature EARLY SENESCENCE1 Encodes a SCAR-LIKE PROTEIN2 That Affects Water Loss in Rice
Subcellular localization as per literature Cytoplasm
Cells used for localization experiment onion and tobacco epidermal cells and tobacco protoplasts
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 26243619
Reference of localization http://www.plantphysiol.org/content/169/2/1225.long
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.083
NLS score -0.47
Protein Sequence >LOC_Os01g11040.1 protein
MPLVRFEVRNEVGLGDPDLYGGGGGGGGGGGGGGVGAAAKKGGEAEPKALLEGVAVAGLVGILRQLGDLAEFAADVFHDLHEQVITTSARGRKVLTRVQN
IEAALPSLEKAVKNQKSHIHFTYVPGSDWHAQLKDEQNHLLSSDLPRFMMDSYEECRDPPRLYLLDKFDNAGAGACSRRHSDPSYFKKAWDMMRADKTGN
FQREKKSQKIKRKGSRLREPYHGQTTPRQRNGELQRALTAVQLTSRHFATPSTDGRSLSENRSTSDVRSNPDNISRSSSFSSKARLSFTEQVLDTKPTVV
PHENGHDKLSNNNLHKLSNTPLHTRLNGTSADDLGDDLKQSSLLDDMTARSPSVKWDEKAEITMSTTSVYCDDVVMDKAEHVQSKCISPEQQEIDHREME
TLEQQEALHQKAKQLLVSSGLNHHDEVPSETDNYVDALNTLESETETEPELQTKSRVKPVPSLNVDVPQVELIDNIVTESPDSSVAEFPDAYQNSSMPPA
PESAADFPSLSSADAPDISEPVLSGYTANPHPEVSAIATNTPVSNTEDAPGPLEISESASRAYIITLPNQSLPDSKEIPDSKAEDAPIDSPEKLEPGPSS
YTPTIPIKESSIVSQNTNAENVSGDCSEGTACAISYSQHIISDKPTNEVSATNSSPDDTSSDEDTVESGGIVEVSNSQPMPLNDSLENGCATQGLPANAP
TNSTGVSSVKLWTNAGLFGLEPSKPPVFGAHDGPKEDTTPGHTQPQLCHSTGCPEVHFSKPTESAQVYVPNGNSPITSSFVGKLVGICPGSTSHSSETNQ
STVRTPDTVIGQTEGSTGCSTSFEHSDHKNIIGKQTSISELLESEDSAENGAEMFSKTDMTGRNNMNQVSASSFSSIAQRFLANTLQRRTPKYTDLPMSS
VIVNTDANGTDESTQISSLAPNETTFEASQFEKKTENDTNGLPKSSLFSSSHYSEKSSPPLEYMKISFHPMSAFEMSKLDLDFSDENLHENADDMMLPTF
QLLPGSSVPQLGSGSESEDDTFGRSYSYSSYDDLSPRLYSNSELWDQEDANGLEDHDMHNNPNQIGSFGAPISSFVEFEQMDLSGAKSTVSLTDLGDDNG
LGTLDSHPAGELPNFDTLMAHQNEAFIPHNPVSLSPDEGQLPPPPPLPPMQWRTMRQVASVEEGRGSAAKEDMLESTSDLPPVHTPVQEEHLLPIAPPDQ
QNLLPIAPPDQQGHAKENDRKVDGVKEISNPLDIEIRASLLQQIRDKSGQQKLNGHEKSKAVGNDTKNLDEREELLQQIRSKTFNLRRTNASKTNTSSPT
TANSSVVAILEKANAIRQAVASDEGGDDDSWSDI

GO Analysis
1
GO Category Cellular comBiological Processonent
GO Term cytoplasm
2
GO Category Molecular Function
GO Term molecular_function
3
GO Category Molecular Function
GO Term protein binding
4
GO Category Biological Process
GO Term cellular component organization
5
GO Category Biological Process
GO Term cellular process
Presence of Splice variants No