| RGAP LOCUS ID |
LOC_Os01g09800 |
| RAP-DB ID |
Os01g0194300 |
| Function |
BTBA1 - Bric-a-Brac,Tramtrack, Broad Complex BTB domain with Ankyrin repeat region, expressed |
Sub-cellular Localization
Predictions |
1) WoLF-PSORT Prediction |
| localization |
Nuclear |
| score |
5.5 |
2) CELLO
Prediction
|
| localization |
Cytoplasmic |
| score |
2.412 |
3) NUCPRED
Prediction
|
| localization |
Non Nuclear |
| score |
0.54 |
4) Y-Loc
Prediction
|
| localization |
Nuclear |
| score |
65.02 |
| confidence value |
0.71 |
| Number Of Software Predicting Nucleus |
2 |
| Seed Specific |
No |
| Transcription factor category |
|
Experimental evidence for
subcellular localization |
| Published gene name (updated 1 January 2020) |
OsNPR1|NH1 |
| Function assigned as per literature |
OsNPR1/NH1 confers disease resistance with enhanced herbivore susceptibility |
| Subcellular localization as per literature |
Cytoplasm but defence activation or SAR-like responses lead to OsNPR1 monomerization and localization in the nucleus |
| Cells used for localization experiment |
Root tip cells. |
| NUCLEAR or Not Nuclear |
NUCLEAR |
| PMID |
17309686 |
| Reference of localization |
https://onlinelibrary.wiley.com/doi/abs/10.1111/j.1467-7652.2007.00243.x |
| Is Subcellular localization evidence by author available ?
|
No |
Sequence Analysis
|
| Number of PAT4 |
2 |
| Number of PAT7 |
0 |
| Number of Bipartite |
0 |
| Basic residues % |
0.127 |
| NLS score |
0.09 |
| Protein Sequence |
>LOC_Os01g09800.1 protein
MEPPTSHVTNAFSDSDSASVEEGGADADADVEALRRLSDNLAAAFRSPEDFAFLADARIAVPGGGGGGGDLLVHRCVLSARSPFLRGVFARRAAAAAGGG
GEDGGERLELRELLGGGGEEVEVGYEALRLVLDYLYSGRVGDLPKAACLCVDEDCAHVGCHPAVAFMAQVLFAASTFQVAELTNLFQRRLLDVLDKVEVD
NLLLILSVANLCNKSCMKLLERCLDMVVRSNLDMITLEKSLPPDVIKQIIDARLSLGLISPENKGFPNKHVRRIHRALDSDDVELVRMLLTEGQTNLDDA
FALHYAVEHCDSKITTELLDLALADVNHRNPRGYTVLHIAARRREPKIIVSLLTKGARPADVTFDGRKAVQISKRLTKQGDYFGVTEEGKPSPKDRLCIE
ILEQAERRDPQLGEASVSLAMAGESLRGRLLYLENRVALARIMFPMEARVAMDIAQVDGTLEFNLGSGANPPPERQRTTVDLNESPFIMKEEHLARMTAL
SKTVELGKRFFPRCSNVLDKIMDDETDPVSLGRDTSAEKRKRFHDLQDVLQKAFHEDKEENDRSGLSSSSSSTSIGAIRPRR |
GO Analysis |
| 1 |
| GO Category |
Biological Process |
| GO Term |
response to stress |
|
| 2 |
| GO Category |
Biological Process |
| GO Term |
response to biotic stimulus |
|
| 3 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
nucleus |
|
| 4 |
| GO Category |
Biological Process |
| GO Term |
signal transduction |
|
| 5 |
| GO Category |
Biological Process |
| GO Term |
cell death |
|
| 6 |
| GO Category |
Biological Process |
| GO Term |
response to abiotic stimulus |
|
| 7 |
| GO Category |
Cellular comBiological Processonent |
| GO Term |
cytoplasm |
|
| 8 |
| GO Category |
Biological Process |
| GO Term |
biosynthetic process |
|
| 9 |
| GO Category |
Biological Process |
| GO Term |
nucleobase, nucleoside, nucleotide and nucleic acid metabolic process |
|
| 10 |
| GO Category |
Molecular Function |
| GO Term |
protein binding |
|
| 11 |
| GO Category |
Biological Process |
| GO Term |
response to endogenous stimulus |
|
| Presence of Splice variants |
No |
