LOC_Os01g09640

Expression Profile

RGAP LOCUS ID LOC_Os01g09640
RAP-DB ID Os01g0192300
Function Myb transcription factor, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 7

2) CELLO Prediction
localization Nuclear
score 4.109

3) NUCPRED Prediction
localization Nuclear
score 0.88

4) Y-Loc Prediction
localization Nuclear
score 99.97
confidence value 0.87
Number Of Software Predicting Nucleus 3
Seed Specific No
Transcription factor category MYB_related

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsMYB1R1
Function assigned as per literature
Subcellular localization as per literature Nucleus
Cells used for localization experiment Rice protoplast
NUCLEAR or Not Nuclear NUCLEAR
PMID 27545590
Reference of localization https://febs.onlinelibrary.wiley.com/doi/full/10.1002/1873-3468.12374
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 1
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.113
NLS score -0.16
Protein Sequence >LOC_Os01g09640.1 protein
MARKCSSCGNNGHNSRTCTGQRSLQESGGGYGGGGAGGVRLFGVQLHVGGAPLKKCFSMECLSSPSPSPSPAYYAAVAAAASNSSPTVSSSSSLVSVEEA
GEKMANGYLSDGLMARAQERKKGVPWTEEEHRKFLVGLEKLGKGDWRGISRHFVTTRTPTQVASHAQKYFLRQSSLTQKKRRSSLFDVIEDAEKAPSVNE
RLKLRHETASVPAEMGFPALSLGISSMAQPEAMLLPPPSLTLTPSCSSPAVSSSSSEQPRTIHPSLMVAKPQVQLQLQPPDLELKISTVRQNDQPSSSPR
TPFLGTIRVT

GO Analysis
1
GO Category Molecular Function
GO Term DNA binding
2
GO Category Biological Process
GO Term biosynthetic process
3
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
4
GO Category Molecular Function
GO Term sequence-specific DNA binding transcription factor activity
5
GO Category Molecular Function
GO Term nucleic acid binding
Presence of Splice variants No