LOC_Os01g09620

Expression Profile

RGAP LOCUS ID LOC_Os01g09620
RAP-DB ID Os01g0192000
Function zinc finger/CCCH transcription factor, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 13

2) CELLO Prediction
localization Nuclear
score 3.011

3) NUCPRED Prediction
localization Non Nuclear
score 0.41

4) Y-Loc Prediction
localization Cytoplasm
score 74
confidence value 0.51
Number Of Software Predicting Nucleus 2
Seed Specific No
Transcription factor category C3H

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsDOS
Function assigned as per literature OsDOS acts as a negative regulator for leaf senescence in rice, at least in part mediated by the JA pathway
Subcellular localization as per literature Nucleus
Cells used for localization experiment Root cells of transgenic rice plant
NUCLEAR or Not Nuclear NUCLEAR
PMID 16778011
Reference of localization http://www.plantphysiol.org/content/141/4/1376.long
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 1
Number of Bipartite 0
Basic residues % 0.109
NLS score -0.22
Protein Sequence >LOC_Os01g09620.1 protein
MMMMGEGVSSVPPWSHLPVSGVDVLGGGGGGGDEMTPYVIAALRDYLPANDVGVGADEEEEAAAMAAAVDAYACDEFRMYEFKVRRCARGRSHDWTECPF
AHPGEKARRRDPRKYHYSGTACPDFRKGGCKRGDACEYAHGVFECWLHPARYRTQPCKDGTACRRRVCFFAHTPDQLRVLPAQQSSPRSVASSPLAESYD
GSPLRRQAFESYLTKTIMSSSPTSTLMSPPKSPPSESPPLSPDGAAAIRRGSWPGVGSPVNDVLASFRQLRLNKVKSSPSGGWSYPSSSAVYGSPKAATG
LYSLPTTPLASTATVTTASSFMPNLEPLDLGLIGDEEPVQRVESGRALREKVFERLSRDGAISGDATAFATAGVGLDVDWVSDLIN

GO Analysis
1
GO Category Cellular comBiological Processonent
GO Term cellular_component
2
GO Category Biological Process
GO Term biosynthetic process
3
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
4
GO Category Molecular Function
GO Term sequence-specific DNA binding transcription factor activity
Presence of Splice variants YES