LOC_Os01g09550

Expression Profile

RGAP LOCUS ID LOC_Os01g09550
RAP-DB ID Os01g0191300
Function no apical meristem protein, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 7

2) CELLO Prediction
localization Nuclear
score 3.473

3) NUCPRED Prediction
localization Nuclear
score 0.9

4) Y-Loc Prediction
localization Chloroplast
score 9
confidence value 0.21
Number Of Software Predicting Nucleus 2
Seed Specific No
Transcription factor category NAC

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) SNAC3|ONAC066
Function assigned as per literature SNAC3 plays important roles in stress responses
Subcellular localization as per literature SNAC3 was colocalized with Ghd7 in nucleus
Cells used for localization experiment rice protoplasts
NUCLEAR or Not Nuclear NUCLEAR
PMID 26261267
Reference of localization https://academic.oup.com/jxb/article/66/21/6803/2893318
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 3
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.117
NLS score 0.34
Protein Sequence >LOC_Os01g09550.1 protein
MYTSPTLLALSFALLLLILLLYYSSSLLYSQLATRRRLTHACARSLPDAYESGMNRGHISSSELIDAKLEERRISTAKHCPSCGNKLDCKPDWVGLPAGV
KFDPTDQELIEHLEAKVREEGSRSHPLIDEFIPTIEGEDGICYTHPEKLPGVTRDGLSKHFFHRPSKAYTTGTRKRRKIQTECDVQKGETRWHKTGKTRP
VMVSGRQKGCKKILVLYTNFGKHRKPEKTNWVMHQYHLGDLEEEKEGELVVCKIFYQTQPRQCSWSSDRGGGAAATASAVTTAAVQQDQQRRRDSGSGSC
SSTRDHEVSATSYSTAGYAVAAAVEMQHLKHAADHFSFAPFRKSFEEVGISGDQVHSNQLGRSEQQHAGQEQQPHRPLLATTTAVPATAFLISRPTNPVS
NIVPPAMQHASVVLDHDQFHVPAILLHHDKFQQQQQKLDRRSAGLEELIMGCTSSSTKGEASIPHSQETEWPYQPYWTPDNQDHHG

GO Analysis
1
GO Category Biological Process
GO Term biosynthetic process
2
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
3
GO Category Biological Process
GO Term multicellular organismal development
4
GO Category Molecular Function
GO Term sequence-specific DNA binding transcription factor activity
Presence of Splice variants YES