LOC_Os01g09470

Expression Profile

RGAP LOCUS ID LOC_Os01g09470
RAP-DB ID Os01g0190500
Function IQ calmodulin-binding motif family protein, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 13

2) CELLO Prediction
localization Nuclear
score 2.868

3) NUCPRED Prediction
localization Non Nuclear
score 0.62

4) Y-Loc Prediction
localization Chloroplast
score 5
confidence value 0.21
Number Of Software Predicting Nucleus 2
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) GW5L
Function assigned as per literature GW5L acts as a negative regulator of both grain size and salt stress tolerance in rice
Subcellular localization as per literature Plasma membrane
Cells used for localization experiment Rice protoplasts
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 30450718
Reference of localization https://onlinelibrary.wiley.com/doi/pdf/10.1111/jipb.12745
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 3
Number of Bipartite 0
Basic residues % 0.148
NLS score 0.56
Protein Sequence >LOC_Os01g09470.1 protein
MGKAARWFRSLWGGGGGKKEQGREHGRTAAAPPPPDRKRWSFAKSSRDSTEGEAAAAVGGNAAIAKAAEAAWLKSMYSDTEREQSKHAIAVAAATAAAAD
AAVAAAQAAVEVVRLTSQGPPTSSVFVCGGVLDPRGRAAAVKIQTAFRGFLAKKALRALKALVKLQALVRGYLVRRQAAATLQSMQALVRAQAAVRAARS
SRGAALPPLHLHHHPPVRPRYSLQERYMDDTRSEHGVAAYSRRLSASIESSSYGYDRSPKIVEMDTGRPKSRSSSVRTSPPVVDAGAAEEWYANSVSSPL
LPFHQLPGAPPRISAPSARHFPEYDWCPLEKPRPATAQSTPRLAHMPVTPTKSVCGGGGYGASPNCRGYMSSTQSSEAKVRSQSAPKQRPEPGVAGGTGG
GARKRVPLSEVTLEARASLSGVGMQRSCNRVQEAFNFKTAVLSRFDRSSEPAAERDRDLFLQRRW

GO Analysis
1
GO Category Cellular comBiological Processonent
GO Term cellular_component
2
GO Category Molecular Function
GO Term protein binding
3
GO Category Biological Process
GO Term biological_process
Presence of Splice variants No