LOC_Os01g08420

Expression Profile

RGAP LOCUS ID LOC_Os01g08420
RAP-DB ID Os01g0179400
Function EMB2410, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization extr
score 4

2) CELLO Prediction
localization Cytoplasmic
score 1.55

3) NUCPRED Prediction
localization Non Nuclear
score 0.41

4) Y-Loc Prediction
localization Nuclear
score 93.17
confidence value 0.51
Number Of Software Predicting Nucleus 1
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) SSG4
Function assigned as per literature SSG4 influences the size of starch grains in rice endosperm
Subcellular localization as per literature Chloroplasts (N-terminal coding region (639 bp) of the SSG4 cDNA was used)
Cells used for localization experiment Nicotiana benthamiana leaves
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 24335509
Reference of localization http://www.plantphysiol.org/content/164/2/623.long
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.099
NLS score -0.47
Protein Sequence >LOC_Os01g08420.1 protein
MLAPQSTGFLSISPDSIMLNATGRPDENFSIEVNVPLFFGTHEAIQDGRLLSIFLQKGQLRSNICYHPENLTSLEVRNLPLDELEFASLRGFVQKAELQL
NFQKRRGHGLLSVIRPKFSGMLGESLDIAARWSGDVITMEKSVLEQANSKYELQGEYVFPGTRDRFPMESQSNGFIEKAMGGHLGSMMSSMGRWRMRLEV
PGAEVAEMLPLARLLSRSTDPAIRSRSKELFMQTLHSVGFNAESLRDQLKALEMYPDWLDDDTIEDITLPGLAELRGYWRGSLDASGGGNGDTMADFDFN
GEDWEWGTYKTQRVLASGSFSNNDGLRLDKLFIQKDNATLHADGSILGPLTNLHFAVLNFPVGLIPALVQAIESSTTDSIHFLRQWLTPIKGILHMEGDL
RGTLAKPECDVQIRLLDGTIGGIDLGRAEVLASVTPTSRFVFDANFEPTIQSGHVNIQGSVPVTYVDSNSIEEDLEGGDGKQGIIRIPVWAKDRGLTNDI
SETRIMRDKPDEGWEFQLAESLKGLSWNMLEPGEVRINADIKDGGMTLITALSPYSNWLQGYAEVLLQVKGTVDHPVVDGSASFHRATVASPFLRTPLTN
FAGNVHVISNRLCISSMESRVGRKGRLSMKGTLPLHNIEPSANDKIELKCEVLDIRAKNILSGQVDSQLQVTGSILRPDVSGMIRLSHGEAYLPHDKGNG
AVATRLSSNKSISVPAGFDQRTVSRDVSHFLGSLSTSPDGQQSETERTPEHGSFKPNIDARLNDLKLTFGPELRIVYPLILNFAVSGDLELNGMVHPKYI
RPKGVLTFENGEVNLVATQVRLKNDHLNVAKFEPDLGLDPILDLVLVGSEWQFKIQSRASMWQDNLVVTSTRSVDQDVLSPSEAAKVFESQLAESLLEGD
GQLAFKKLATATLETLMPRIEGKGEFGQARWRLVYAPQIPSLLSVDPTVDPLKSLANNISFATEVEVQLGKRLQASVVRQMKDSEMAMQWSLIYQLTSRL
RVLFQSTPSNRLLFEYSATSQG

GO Analysis
1
GO Category Molecular Function
GO Term molecular_function
2
GO Category Biological Process
GO Term reproduction
3
GO Category Biological Process
GO Term post-embryonic development
4
GO Category Biological Process
GO Term embryo development
Presence of Splice variants No