LOC_Os01g08320

Expression Profile

RGAP LOCUS ID LOC_Os01g08320
RAP-DB ID Os01g0178500
Function OsIAA1 - Auxin-responsive Aux/IAA gene family member, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 9

2) CELLO Prediction
localization Chloroplast
score 2.325

3) NUCPRED Prediction
localization Non Nuclear
score 0.31

4) Y-Loc Prediction
localization Nuclear
score 99.8
confidence value 0.93
Number Of Software Predicting Nucleus 2
Seed Specific No
Transcription factor category AUX/IAA

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsIAA1
Function assigned as per literature OsIAA1  play important roles in the cross-talk of auxin and brassinosteroid signaling pathways and plant morphogenesis
Subcellular localization as per literature Nucleus
Cells used for localization experiment onion epidermal cells
NUCLEAR or Not Nuclear NUCLEAR
PMID 19266169
Reference of localization https://link.springer.com/article/10.1007/s11103-009-9474-1
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 2
Number of Bipartite 0
Basic residues % 0.131
NLS score 0.22
Protein Sequence >LOC_Os01g08320.1 protein
MSVETERSSTESSAASGLDFEDTALTLRLPGSLAAAAAPDPDRKRSSPSSSDAADAADNSSPLAAAADAPPAPKARVVGWPPVRSFRKNALAAKFVKVAV
DGAPYLRKVDLEAYSGYDQLLRALQDKFFSHFTIRKFADDERKLVDAVNGTEYVPTYEDKDGDWMLVGDVPWKMFVETCQRLRLMKSSEAVNLAPRAAQ

GO Analysis
1
GO Category Biological Process
GO Term response to endogenous stimulus
2
GO Category Cellular comBiological Processonent
GO Term nucleus
3
GO Category Biological Process
GO Term biosynthetic process
4
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
5
GO Category Molecular Function
GO Term sequence-specific DNA binding transcription factor activity
Presence of Splice variants No