LOC_Os01g08300
| RGAP LOCUS ID | LOC_Os01g08300 |
| RAP-DB ID | Os01g0178300 |
| Function | expressed protein |
Sub-cellular Localization Predictions |
|
1) WoLF-PSORT Prediction |
|
| localization | cyto |
| score | 8 |
2) CELLO Prediction |
|
| localization | Nuclear |
| score | 1.611 |
3) NUCPRED Prediction |
|
| localization | Non Nuclear |
| score | 0.15 |
4) Y-Loc Prediction |
|
| localization | Cytoplasm |
| score | 41 |
| confidence value | 0.13 |
| Number Of Software Predicting Nucleus | 1 |
| Seed Specific | No |
| Transcription factor category | |
Experimental evidence for subcellular localization |
|
| Published gene name (updated 1 January 2020) | OsCDT3 |
| Function assigned as per literature | OsCDT3 may play a role to high Al tolerance in rice |
| Subcellular localization as per literature | Plasma membrane |
| Cells used for localization experiment | Onion epidermal cells |
| NUCLEAR or Not Nuclear | NOT NUCLEAR |
| PMID | 23888867 |
| Reference of localization | https://onlinelibrary.wiley.com/doi/epdf/10.1111/tpj.12296 |
| Is Subcellular localization evidence by author available ? | No |
Sequence Analysis |
|
| Number of PAT4 | 1 |
| Number of PAT7 | 0 |
| Number of Bipartite | 0 |
| Basic residues % | 0.075 |
| NLS score | -0.29 |
| Protein Sequence | >LOC_Os01g08300.1 protein MYNPPAAQEMSYSDHVKKRHEDKGCLYACLFTLCCCFCCYETCECCLECLCCC |
GO Analysis |
|
| Presence of Splice variants | No |