LOC_Os01g07500

Expression Profile

RGAP LOCUS ID LOC_Os01g07500
RAP-DB ID Os01g0169800
Function alliin lyase precursor, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 9

2) CELLO Prediction
localization Chloroplast
score 2.371

3) NUCPRED Prediction
localization Non Nuclear
score 0.23

4) Y-Loc Prediction
localization Chloroplast
score 9
confidence value 0.51
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) FIB|TSG1
Function assigned as per literature TSG1 playS a prominent role in local auxin biosynthesis in rice.
Subcellular localization as per literature Endoplasmic reticulum
Cells used for localization experiment Rice protoplasts
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 31081210
Reference of localization https://onlinelibrary.wiley.com/doi/pdf/10.1111/jipb.12820
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 1
Number of PAT7 1
Number of Bipartite 0
Basic residues % 0.118
NLS score 0.21
Protein Sequence >LOC_Os01g07500.1 protein
MAALRVGTRAVEGRFQASNGGGGGGGGMAPSSRLVAAHREAKPRSSHSAAPWKLPRRRAGAMPLWRVAVFASVALNVATLALLLHHYATSPPPHHHHHDA
GLATRSSDAAVHRRARTASSMAPSTGKPAVTTDSVINLDHGDPTMFEEFWRETGDAAEVVIPGWQTMSYFSDVTNVCWFLEPELDRQVRRLHRVVGNAAV
DGYHVLVGTGSTQLFMAALYALAPDAAAAAAGEPISVVSTAPYYSSYPAVTDFLRSGLFRWAGDADAFKGDSYIELVCSPNNPDGAIREAVLDPKTGNGR
TVHDLAYYWPQYTPITKRASHDIMLFTVSKSTGHAGTRIGWALVKDRAIARKMTKFVELNTIGVSKDSQMRAAKVLAAVSDGYERRPEQTKETMTTPLRL
FDFGRRKMVERWSMLRAAAAASGIFSLPEETSGFCNFTKETAATNPAFAWLRCDREDVEDCAGFLRGHKILTRSGAQFGADARYVRVSMLDRDDAFDIFI
NRLSSLK

GO Analysis
1
GO Category Molecular Function
GO Term transferase activity
2
GO Category Biological Process
GO Term response to abiotic stimulus
3
GO Category Biological Process
GO Term tropism
4
GO Category Biological Process
GO Term response to endogenous stimulus
5
GO Category Biological Process
GO Term multicellular organismal development
6
GO Category Cellular comBiological Processonent
GO Term cell
7
GO Category Biological Process
GO Term biological_process
8
GO Category Biological Process
GO Term metabolic process
9
GO Category Biological Process
GO Term reproduction
10
GO Category Biological Process
GO Term post-embryonic development
11
GO Category Biological Process
GO Term embryo development
12
GO Category Biological Process
GO Term flower development
13
GO Category Biological Process
GO Term biosynthetic process
14
GO Category Biological Process
GO Term cellular process
15
GO Category Molecular Function
GO Term catalytic activity
16
GO Category Biological Process
GO Term anatomical structure morphogenesis
17
GO Category Biological Process
GO Term cell differentiation
Presence of Splice variants No