LOC_Os01g07480

Expression Profile

RGAP LOCUS ID LOC_Os01g07480
RAP-DB ID Os01g0169400
Function DUF260 domain containing protein, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 13

2) CELLO Prediction
localization Chloroplast
score 1.695

3) NUCPRED Prediction
localization Non Nuclear
score 0.03

4) Y-Loc Prediction
localization Chloroplast
score 5
confidence value 0.02
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category LOB/LBD

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsRA2
Function assigned as per literature OsRA2 acts downstream of RCN2 in regulating pedicel and branch lengths, but upstream of RCN2 for control of the number of secondary branches
Subcellular localization as per literature Nucleus
Cells used for localization experiment Root apices from the transgenic plants 
NUCLEAR or Not Nuclear NUCLEAR
PMID 28955349
Reference of localization https://www.frontiersin.org/articles/10.3389/fpls.2017.01538/full
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.076
NLS score -0.47
Protein Sequence >LOC_Os01g07480.2 protein
MASSSSTSNSAISSVVASAVATTTPGAGSPCAACKFLRRKCLPGCVFAPYFPPEEPQKFANVHKVFGASNVTKLLNELLPHQREDAVSSLAYEAEARVKD
PVYGCVGAISVLQRQVHRLQKELDTAHAELLRYACGEVGIPTALPVTAAPRLAAAMPAPGQLAAAVSAGMYGGGRRLGVIDGGGIAPPSPHTAGCYYARN
NNAGSIGADVAPVLPYASVANWTVNAISTTTTNSGSESIGMDHKEGGDSSM

GO Analysis
1
GO Category Biological Process
GO Term anatomical structure morphogenesis
2
GO Category Biological Process
GO Term multicellular organismal development
Presence of Splice variants YES