LOC_Os01g07330

Expression Profile

RGAP LOCUS ID LOC_Os01g07330
RAP-DB ID Os01g0167700
Function expressed protein

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 12

2) CELLO Prediction
localization Nuclear
score 4.365

3) NUCPRED Prediction
localization Nuclear
score 0.92

4) Y-Loc Prediction
localization Nuclear
score 99.58
confidence value 0.74
Number Of Software Predicting Nucleus 4
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) HEIP1|OsAGG1
Function assigned as per literature HEIP1 regulates crossover formation during meiosis in rice
Subcellular localization as per literature Meiotic chromosomes
Cells used for localization experiment Wild type pollen mother cells (PMCs)
NUCLEAR or Not Nuclear NUCLEAR
PMID 30275327
Reference of localization http://www.pnas.org/content/115/42/10810
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 2
Number of Bipartite 0
Basic residues % 0.135
NLS score 0.3
Protein Sequence >LOC_Os01g07330.1 protein
MCIGRLSSSSDHHDGAASANPYKEPLGCKIPPPKSNSVKKQNPNVELNNEISLFDLVSDEGPNNKSTARPAREAHVSFSVKGLGHVKMETPPQSPRSTKR
TLPLPPKVMRYTQNKARRYIPFDATKQLDSIINDINVLKERRFSEKRTCPLDESGYERSKQSNCYFPHSFENHNNKFFPEDEDMFCETKAEECWRSKHGR
LDDNLTDENSERLWKMEPFNSEDRFPTPIVEQFDTRDYGFKDRYSPEQRTSTRTNTRFETSATHDLFSDQSMMDNGNDTVLFDWERHPPIKKKSNLNSTF
GPSAWSFDMVDDSEKRRSPRSEESCSSAAVMKDGSCKKPSLSVECEENKMNEKDDFHISFDNLDIPKMDAHLDGVSLFDNLEEHHKRTDDQNNLEAGYWS
DKATEKQRTREPSCRLSLKEKFSNWGSTSPTTHWKGQTGLSNPSSCTVLHEDKPFNSASEMSTYQTAGSSSPERRPASKVSPVFHRPDNAIFDDDIHLQS
SVSDIFGDRIEFSKPNCSMGLQSDIDMSTFLAEKVDKRKEDNLDTSKNQNADMFLPNKSVSSVRQNVGGQHSSCAQQPGKDSLLQGFSPGIDFQDSRLNS
FWEDGLADNGTFQGDIELTDLLTRKNSDKNEDRIEKLSKPETKMLTETPQAYPDHRNEMRETETCSDGSEVTNPPGVQKQTSLATQVPANLGCLQETSRE
MLKVHAHTECVKREKIEYPCVDFSTPLHLRNKIPDVDHSKSNFMFHSPFVGEEVGIEKKIIASVSPNNSDVQYKVMLEHRVLRRLCVQKIVVDTPIKNKL
DKDNHFRMMEDGYHVLPKSV

GO Analysis
1
GO Category Molecular Function
GO Term molecular_function
2
GO Category Cellular comBiological Processonent
GO Term cellular_component
3
GO Category Biological Process
GO Term biological_process
Presence of Splice variants YES