LOC_Os01g06640

Expression Profile

RGAP LOCUS ID LOC_Os01g06640
RAP-DB ID Os01g0159800
Function basic helix-loop-helix, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 6

2) CELLO Prediction
localization Nuclear
score 3.056

3) NUCPRED Prediction
localization Nuclear
score 0.86

4) Y-Loc Prediction
localization Nuclear
score 99.53
confidence value 0.9
Number Of Software Predicting Nucleus 4
Seed Specific No
Transcription factor category bHLH

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsbHLH035
Function assigned as per literature OsbHLH035 mediates germination and confers recovery after salt stress relief through ABA-dependent and ABA-independent pathways, respectively
Subcellular localization as per literature Nucleus
Cells used for localization experiment Rice root cells
NUCLEAR or Not Nuclear NUCLEAR
PMID 30203325
Reference of localization https://thericejournal.springeropen.com/articles/10.1186/s12284-018-0244-z
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 1
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.143
NLS score -0.16
Protein Sequence >LOC_Os01g06640.1 protein
MAECQPLQLQEGKKLQELQPYDGCNPSVYRGPILLPRQANSAPPAVPPEMSSSSGSGRSATEARALKIHSEAERRRRERINAHLTTLRRMIPDTKQMDKA
TLLARVVDQVKDLKRKASEITQRTPLPPETNEVSIECFTGDAATAATTVAGNHKTLYIKASISCDDRPDLIAGITHAFHGLRLRTVRAEMTSLGGRVQHV
FILCREEGIAGGVSLKSLKEAVRQALAKVASPELVYGSSHFQSKRQRILESHCSIMSI

GO Analysis
1
GO Category Molecular Function
GO Term DNA binding
2
GO Category Cellular comBiological Processonent
GO Term nucleus
3
GO Category Biological Process
GO Term biosynthetic process
4
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
5
GO Category Molecular Function
GO Term sequence-specific DNA binding transcription factor activity
Presence of Splice variants YES