LOC_Os01g04920

Expression Profile

RGAP LOCUS ID LOC_Os01g04920
RAP-DB ID Os01g0142300
Function glycosyl transferase, group 1 domain containing protein, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization plas
score 9

2) CELLO Prediction
localization PlasmaMembrane
score 2.041

3) NUCPRED Prediction
localization Non Nuclear
score 0.19

4) Y-Loc Prediction
localization Chloroplast
score 9
confidence value 0.42
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsSQD2|OsSQD2.2
Function assigned as per literature rice SQD2.2 exhibits a novel role in flavonoid synthesis and plays an important role in mediating sugar allocation between primary and secondary metabolism in rice
Subcellular localization as per literature cytoplasm
Cells used for localization experiment epidermal cells of tobacco leaves
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 28680100
Reference of localization https://www.nature.com/articles/s41598-017-04002-2
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 2
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.111
NLS score 0.09
Protein Sequence >LOC_Os01g04920.1 protein
MEYPPQFPTPQLHTPISSSSSSSSSPRLYTRRVELLLLLFLAPPQHRRLEAHANAGSEEKDCFFFFFCVCAVFLGFLAMVIGAEIKDEMEEAPPLLLDEA
ARPRRVALFVEPSPFAYISGYKNRFQNFIKHLREMGDEVIVVTNHEGVPQEFHGAKVIGSWSFPCPMYGKVPLSLALSPRIISEVAKFKPDIIHASSPGI
MVFGALAIAKLLGVPLVMSYHTHVPVYIPRYTFSWLVEPMWQVIRFLHRAADLTLVPSVAISKDFETAHVISANRIRLWNKGVDSASFHPKFRSHEMRVR
LSDGEPEKPLIIHVGRFGREKNLDFLKTVMDRLPGVRIAFIGDGPYRSELEKMFEGMPAVFTGMMQGEELSQAYASGDVFVMPSESETLGQVVLESMSSG
VPVVAARAGGVPDIIPEDQEGKTSFLFTPGDLEDCLGKIQLLLTDKEFRDNMGMTARAEMEKCDWRAASKKIRNEFYNAAIWYWRKKRAELIKPLQWLAQ
MFLPAPEVNRITQH

GO Analysis
1
GO Category Biological Process
GO Term response to extracellular stimulus
2
GO Category Biological Process
GO Term cell communication
3
GO Category Biological Process
GO Term response to stress
4
GO Category Biological Process
GO Term biosynthetic process
5
GO Category Biological Process
GO Term cellular process
6
GO Category Biological Process
GO Term lipid metabolic process
7
GO Category Biological Process
GO Term metabolic process
8
GO Category Molecular Function
GO Term transferase activity
9
GO Category Cellular comBiological Processonent
GO Term plastid
Presence of Splice variants YES