LOC_Os01g04814

Expression Profile

RGAP LOCUS ID LOC_Os01g04814
RAP-DB ID Os01g0141100
Function vacuolar protein sorting-associating protein 4B, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 6

2) CELLO Prediction
localization Cytoplasmic
score 2.685

3) NUCPRED Prediction
localization Non Nuclear
score 0.29

4) Y-Loc Prediction
localization Cytoplasm
score 99
confidence value 0.93
Number Of Software Predicting Nucleus 1
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsSKD1
Function assigned as per literature
Subcellular localization as per literature NA
Cells used for localization experiment
NUCLEAR or Not Nuclear
PMID
Reference of localization
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 1
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.141
NLS score -0.22
Protein Sequence >LOC_Os01g04814.1 protein
MYSNFKEQAIEYVKQAVQEDNAGNYVKAFPLYMNALEYFKTHLKYEKNPKIKEAITAKFTEYLRRAEEIRAVLDEGGGGGGANGGDAAVATRPKTKGKDG
EGGGDDSEQSKLRAGLNSAIITEKPNIKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRRPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLV
SKWMGESEKLVANLFQMARENAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGHNDDKVLVLAATNTPYALDQAVRRRFDKRIYIPLPDLK
ARQHMFKVHLGDTPHNLNESDFENLARRTDGFSGSDIAVCVKDVLFEPVRKTQDAMFFFKADGDMWMPCGPKQSGAVQTTMQELASKGLAAKILPPPISR
TDFEKVLARQRPTVSKKDLEVHERFTKEFGEEG

GO Analysis
1
GO Category Cellular comBiological Processonent
GO Term nucleus
2
GO Category Biological Process
GO Term metabolic process
3
GO Category Molecular Function
GO Term nucleotide binding
4
GO Category Cellular comBiological Processonent
GO Term cellular_component
5
GO Category Biological Process
GO Term anatomical structure morphogenesis
6
GO Category Biological Process
GO Term cellular component organization
7
GO Category Biological Process
GO Term cell differentiation
8
GO Category Biological Process
GO Term multicellular organismal development
9
GO Category Cellular comBiological Processonent
GO Term cytoplasm
10
GO Category Biological Process
GO Term transport
11
GO Category Biological Process
GO Term cellular process
12
GO Category Molecular Function
GO Term protein binding
13
GO Category Molecular Function
GO Term hydrolase activity
14
GO Category Cellular comBiological Processonent
GO Term endosome
Presence of Splice variants YES