LOC_Os01g04370

Expression Profile

RGAP LOCUS ID LOC_Os01g04370
RAP-DB ID Os01g0136100
Function hsp20/alpha crystallin family protein, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization cyto
score 14

2) CELLO Prediction
localization Cytoplasmic
score 3.702

3) NUCPRED Prediction
localization Non Nuclear
score 0.07

4) Y-Loc Prediction
localization Cytoplasm
score 92
confidence value 0.35
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) Oshsp16.9
Function assigned as per literature Oshsp16.9 gene is an important determinant of stress response in plants
Subcellular localization as per literature Cytoplasm
Cells used for localization experiment Onion epidermal cells
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID not available
Reference of localization http://www.plantbreedbio.org/journal/view.html?doi=10.9787/PBB.2014.2.4.370
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.167
NLS score -0.47
Protein Sequence >LOC_Os01g04370.1 protein
MSLVRRSNVFDPFSLDLWDPFDSVFRSVVPATSDNDTAAFANARIDWKETPESHVFKADLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVER
SSGQFMRRFRLPENAKVDQVKAGLENGVLTVTVPKAEVKKPEVKAIEISG

GO Analysis
1
GO Category Biological Process
GO Term response to abiotic stimulus
2
GO Category Biological Process
GO Term response to stress
Presence of Splice variants No