LOC_Os01g04360

Expression Profile

RGAP LOCUS ID LOC_Os01g04360
RAP-DB ID Os01g0136000
Function hsp20/alpha crystallin family protein, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization cyto
score 14

2) CELLO Prediction
localization Cytoplasmic
score 3.885

3) NUCPRED Prediction
localization Non Nuclear
score 0.07

4) Y-Loc Prediction
localization Cytoplasm
score 92
confidence value 0.35
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsHSP16.9C
Function assigned as per literature
Subcellular localization as per literature Nucleus and cytoplasm
Cells used for localization experiment Rice protoplasts
NUCLEAR or Not Nuclear NUCLEAR
PMID 27639642
Reference of localization https://www.sciencedirect.com/science/article/pii/S0006291X16315169
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.174
NLS score -0.47
Protein Sequence >LOC_Os01g04360.1 protein
MSLVRRSNVFDPFADFWDPFDGVFRSLVPATSDRDTAAFANARVDWKETPESHVFKADLPGVKKEEVKVEVEEGNVLVISGQRSKEKEDKNDKWHRVERS
SGQFMRRFRLPENAKVDQVKASMENGVLTVTVPKAEVKKPEVKAIEISG

GO Analysis
1
GO Category Biological Process
GO Term response to abiotic stimulus
2
GO Category Biological Process
GO Term response to stress
Presence of Splice variants No