LOC_Os01g02890

Expression Profile

RGAP LOCUS ID LOC_Os01g02890
RAP-DB ID Os01g0118300
Function phosphatidylserine synthase, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization plas
score 9

2) CELLO Prediction
localization PlasmaMembrane
score 4.909

3) NUCPRED Prediction
localization Non Nuclear
score 0.12

4) Y-Loc Prediction
localization Nuclear
score 45.85
confidence value 0.14
Number Of Software Predicting Nucleus 1
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsSUI1|OsPSS
Function assigned as per literature OsSUI1 regulates stem development in rice
Subcellular localization as per literature Plasma membrane
Cells used for localization experiment Transgenic rice root
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 22956125
Reference of localization https://link.springer.com/article/10.1007%2Fs00425-012-1736-5
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 1
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.108
NLS score -0.22
Protein Sequence >LOC_Os01g02890.1 protein
MEVNGHHKPRREYNGRECNGVQSVNNFGDIDPWTAWAYKPRTVSLLLMGTCFLIWASGALDPERSFSVDRVSSVKRGVFAMIAVFLAYSFLQAPSTVLIR
PHPAIWRLVHGMAVVYLVALTFLLFQTRDDARQFMKYLHPDLGVELPERSYGTDCRIYVPDHPKSRFNNVYILFDEFVIAHILGWWGKAIMIRNQPLLWV
LSIGFELMELTFRHMLPNFNECWWDSIVLDILICNWFGIWAGMKTVRYFDGRTYEWVGLSRQPNIISKVKRTLGQFTPAQWDKDEWYPLLGPWRFIQVLS
LCIVFMIVELNTFFLKFCLWIPPRNPLIVYRLVLWWLIAIPTIREYNTYLQDRKPVKKVGSFCWLSLAICILELLLCIKFGHGLFPKSMPSWLFIAWTTV
ASLLMMFLLVWTWKIYRTMIRKRL

GO Analysis
1
GO Category Molecular Function
GO Term transferase activity
2
GO Category Cellular comBiological Processonent
GO Term nucleus
3
GO Category Biological Process
GO Term biosynthetic process
4
GO Category Biological Process
GO Term cellular process
5
GO Category Biological Process
GO Term lipid metabolic process
6
GO Category Cellular comBiological Processonent
GO Term membrane
7
GO Category Cellular comBiological Processonent
GO Term endoplasmic reticulum
Presence of Splice variants No