LOC_Os01g02720

Expression Profile

RGAP LOCUS ID LOC_Os01g02720
RAP-DB ID Os01g0116600
Function elongation factor Tu, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 5.5

2) CELLO Prediction
localization Nuclear
score 1.656

3) NUCPRED Prediction
localization Non Nuclear
score 0.12

4) Y-Loc Prediction
localization Nuclear
score 96.84
confidence value 0.88
Number Of Software Predicting Nucleus 3
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) LMM5.1|SPL33
Function assigned as per literature negatively regulates cell death and defense responses in rice
Subcellular localization as per literature ER
Cells used for localization experiment rice protoplast and N. benthamiana leaves
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 28199670
Reference of localization https://academic.oup.com/jxb/article/68/5/899/2984262
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.118
NLS score -0.47
Protein Sequence >LOC_Os01g02720.2 protein
MPRKVVSGPDYDDEYNDDYDEYDEDYDDYGGTGHSDDIQHPTKEKESSKKSSSMVPVLWRCSMCMFDNHESMVYCEMCGVFRESFMKSAKDGSIKVHGIP
SDFGTPSMPKSDSTKMPVNTRTTDFGGDPEIKNASISHEKVGSTQYASVGSSSGAGKKLKEDQSSRATSSAQNEDVAQKLSSDIQKLGLEKNEVDTAKPY
LPEEYKPEKWMFANEESGVLSQLNLAIVGHVDSGKSTLSGRLLHLLGRISKKDMHKNEKEAKEKGKGSFAYAWAMDESSEERERGVTMTVAVAYLETNKY
RVVLLDSPGHKDFVPNMISGATQADAAILVVDACTGSFEAGMDGEGGKSVGQTKEHAQLIRSFGVEQLIVAVNKMDAIGYSKERFEFIKVQLGSFLRACN
FKDSSVTWIPLSAVENQNLIKIPSDVRLTSWYQGFCLLDAIDSLQLPSRDVSKPLILPICDVIKSQSTGQLAAFGKLETGAIRIGSKVLISPCGEVATVK
SIERDSNSCDIARAGDNVAVSLQGIDGSKLIAGGILCNPGFPVPVSNFLELRVLVLDVTIPILIGYQVEFHIHHVKEAARVTKIVALLDKAGKPSKTAPR
FLKSKQNAVVQVTLDAPVCVEEFSKCRALGRAFLRSGGSTIAVGVVTRVLGQDQN

GO Analysis
1
GO Category Biological Process
GO Term catabolic process
2
GO Category Biological Process
GO Term nucleobase, nucleoside, nucleotide and nucleic acid metabolic process
3
GO Category Molecular Function
GO Term binding
4
GO Category Molecular Function
GO Term translation factor activity, nucleic acid binding
5
GO Category Biological Process
GO Term translation
6
GO Category Molecular Function
GO Term nucleotide binding
7
GO Category Biological Process
GO Term biological_process
8
GO Category Molecular Function
GO Term hydrolase activity
Presence of Splice variants YES