LOC_Os01g01920

Expression Profile

RGAP LOCUS ID LOC_Os01g01920
RAP-DB ID Os01g0109300
Function HD domain containing protein 2, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 7

2) CELLO Prediction
localization Mitochondrial
score 2.11

3) NUCPRED Prediction
localization Non Nuclear
score 0.43

4) Y-Loc Prediction
localization Chloroplast
score 8
confidence value 0.5
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) WFSL1
Function assigned as per literature WFSL1 is critical for chloroplast development, ribosome biogenesis, and light energy utilization
Subcellular localization as per literature Chloroplast
Cells used for localization experiment rice protoplasts
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 28607371
Reference of localization https://www.nature.com/articles/s41598-017-03327-2
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.117
NLS score -0.47
Protein Sequence >LOC_Os01g01920.1 protein
MKHPSRIKLASPNKSHGLPYLLPVSAGFLPFSHRLACLLAFPIPISHQPQTAANPTSARPHRNLARFSEEEMGEYCGAAPEEDPAMALVTPLPTTTTTTT
TAAAAAIKQPHYYGCFDRCSTKQVFDNLHGNISLDPLAREFVDTEEFQRLRDLKQLGLTYLVYPGAVHTRFEHSLGVYWLAGEAMNNLRLYQGEELGIDR
VDMQTVKLAGLLHDIGHGPFSHLFEHEFLPRVVPGSTWTHENMSALLLDSIVDKHQIDIEADHLKIVMEMIVASSKFTATESTKEKRFLYDIVANGRNGI
DVDKFDYIGRDCRACGLGCNFQYWRLLQGMRVMGDEICYPAKDYLSIHKLFTTRADLHRTVYTHAKVKAVELMLVDALVEANEYLGIALHAQDPADFWKL
DDTIIKSIETAPNDELNKAKGIIQRIRRRELYKFCNEYSVPKDKLEHFKNITAQDIVCSQKSSKVLLKEEDVAVSNVKIDLTRGKDNPLERFLIYKPTFQ
TLIFLRATYQILTCYFCWSAYLLSPASSSLRILVAMRSSPSQMSGSATCYLRTTRTELSGSTPRSTSWLKRCQKPSRTYN

GO Analysis
1
GO Category Biological Process
GO Term metabolic process
2
GO Category Molecular Function
GO Term catalytic activity
3
GO Category Biological Process
GO Term biological_process
Presence of Splice variants YES