LOC_Os01g01710

Expression Profile

RGAP LOCUS ID LOC_Os01g01710
RAP-DB ID Os01g0106900
Function 1-deoxy-D-xylulose 5-phosphate reductoisomerase, chloroplast precursor, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization cyto
score 9

2) CELLO Prediction
localization Chloroplast
score 2.995

3) NUCPRED Prediction
localization Non Nuclear
score 0.05

4) Y-Loc Prediction
localization Chloroplast
score 9
confidence value 0.51
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsDXR
Function assigned as per literature
Subcellular localization as per literature NA
Cells used for localization experiment
NUCLEAR or Not Nuclear
PMID
Reference of localization
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.106
NLS score -0.47
Protein Sequence >LOC_Os01g01710.1 protein
MALKVVSFPGDLAAVSFLDSNRGGAFNQLKVDLPFQTRDRRAVSLRRTCCSMQQAPPPAWPGRAVVEPGRRSWDGPKPISIVGSTGSIGTQTLDIVAENP
DKFRVVALAAGSNVTLLADQVKTFKPKLVAVRNESLVDELKEALADCDWKPEIIPGEQGVIEVARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANK
ETLIAGGPFVLPLAQKHKVKILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPVDKLKEVKVADALKHPNWNMGKKITVDSATLFNKGLEVIEA
HYLFGAEYDDIEIVIHPQSIIHSMIETQDSSVLAQLGWPDMRIPILYTMSWPDRIYCSEVTWPRLDLCKLGSLTFKAPDNVKYPSMDLAYAAGRAGGTMT
GVLSAANEKAVELFIDEKIGYLDIFKVVELTCDAHRNELVTRPSLEEIIHYDLWAREYAASLQPSTGLSPVPV

GO Analysis
1
GO Category Biological Process
GO Term biosynthetic process
2
GO Category Biological Process
GO Term cellular process
3
GO Category Biological Process
GO Term lipid metabolic process
4
GO Category Biological Process
GO Term biological_process
5
GO Category Biological Process
GO Term metabolic process
6
GO Category Biological Process
GO Term carbohydrate metabolic process
7
GO Category Molecular Function
GO Term catalytic activity
8
GO Category Cellular comBiological Processonent
GO Term plastid
Presence of Splice variants YES