LOC_Os01g01484

Expression Profile

RGAP LOCUS ID LOC_Os01g01484
RAP-DB ID Os01g0104600
Function light-mediated development protein DET1, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 9

2) CELLO Prediction
localization Nuclear
score 2.046

3) NUCPRED Prediction
localization Non Nuclear
score 0.6

4) Y-Loc Prediction
localization Chloroplast
score 6
confidence value 0.16
Number Of Software Predicting Nucleus 1
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsDET1
Function assigned as per literature OsDET1 regulates leaf Chlorophyll content and controls photomorphogenesis
Subcellular localization as per literature Nucleus
Cells used for localization experiment Onion epidermal cells
NUCLEAR or Not Nuclear NUCLEAR
PMID 23849131
Reference of localization https://www.sciencedirect.com/science/article/pii/S0168945213001404
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 2
Number of Bipartite 0
Basic residues % 0.105
NLS score 0.3
Protein Sequence >LOC_Os01g01484.1 protein
MATFFRSANLASRVFDRQFLSPRPGATVNTVRQFYENLVPSYTICDIDCPDYSFRKFTDDGNYLVAFSRNHQDLIVYRPIWPTFSCNEPCDSHDLPPKAK
KFDSFFKQLYSISLASSNEYICKDFFLYMECHQFGLFATSTAQSNDSSATEGAIHGVPSIEKITFYLVRLDDGAILDEKAFRNDFINLAHSIGAYLYEDL
LCIVSLRYQTIHVLQIRDSGNLVEVRKIGAFCQEDDELFLHSHGQAARGVSFLPGIKQRLLSFIFRKTWNEESDQTLRVQHLKKKFYFHFQDYVDLIIWK
VQFLDRHHLFIKFGSVDGGVSRSTEQNSAFFAVYNMETTDIVSLYQNSSEELYSLFEYFYDHFHTNPQNSSHGNFISSHSNNVHALDQLRTIKNKANSTS
QQFVKKMMASLPYTCQSQSPSPYFDLSLFRYDEKLISAIDRHRHCTEHPIKFISVKQPNVVKFKIKPGSDSGASDSRAKRISSFLFHPFFPLALSIQQTY
MQPTVVNLHFRR

GO Analysis
1
GO Category Cellular comBiological Processonent
GO Term nucleus
2
GO Category Biological Process
GO Term metabolic process
3
GO Category Biological Process
GO Term response to stress
4
GO Category Biological Process
GO Term DNA metabolic process
5
GO Category Biological Process
GO Term post-embryonic development
6
GO Category Biological Process
GO Term response to abiotic stimulus
7
GO Category Molecular Function
GO Term catalytic activity
Presence of Splice variants YES