LOC_Os01g01420

Expression Profile

RGAP LOCUS ID LOC_Os01g01420
RAP-DB ID Os01g0104100
Function expressed protein

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization Nuclear
score 6.5

2) CELLO Prediction
localization Nuclear
score 2.444

3) NUCPRED Prediction
localization Non Nuclear
score 0.38

4) Y-Loc Prediction
localization Nuclear
score 90.27
confidence value 0.67
Number Of Software Predicting Nucleus 3
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsCOIN
Function assigned as per literature overexpression of OsCOIN significantly enhanced the proline content of the cells and improved tolerance to cold, salt and drought treatment
Subcellular localization as per literature Nuclear and cytoplasm
Cells used for localization experiment onion epidermal cells
NUCLEAR or Not Nuclear NUCLEAR
PMID 17549515
Reference of localization https://link.springer.com/article/10.1007%2Fs00425-007-0548-5
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.119
NLS score -0.47
Protein Sequence >LOC_Os01g01420.2 protein
MQVNNPPTIDTTNPIMSSLCPFAKLASAGATCPVKSSSDNKTTINHTDDDDDDNEKTGNANTDPRVVPPKCPFGYDSNTFKLGPLSCMVCHALLHQSSKC
TPCSHKFCKACILRFKDCPLCGADIQGIEPDDELQGLVDRFIDGHARIKRSHAAGDGEAASDNKTKVIYEDVSMERGAFLVQQAMRAFRAQNIESAKSRL
SMCAQDIREELKSKQDNQELCSQLGAVLGMLGDCCRTLGDAPSAITYYEESAEFLSKLPKKDLELVHTLSVSLNKIGDLRYYDGDLHSARSYYARSLDVR
RSAAKEHSAVASQVIDVATSLAKVADVDRNLGNESMAVEGFEEAIKCLENLKLESGEASLEQRRLSVLDFLQKQLDDK

GO Analysis
1
GO Category Molecular Function
GO Term binding
Presence of Splice variants YES