LOC_Os01g01360

Expression Profile

RGAP LOCUS ID LOC_Os01g01360
RAP-DB ID Os01g0103100
Function peptide transporter PTR2, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization plas
score 9

2) CELLO Prediction
localization PlasmaMembrane
score 4.792

3) NUCPRED Prediction
localization Non Nuclear
score 0.1

4) Y-Loc Prediction
localization Cytoplasm
score 68
confidence value 0.7
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsNPF6.1
Function assigned as per literature NAC42-NPF6.1 forms a signaling cascade as a strategy for high NUE and yield breeding in rice
Subcellular localization as per literature Plasma membrane
Cells used for localization experiment Rice protoplasts
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 31754193
Reference of localization https://www.nature.com/articles/s41467-019-13187-1
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 1
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.076
NLS score -0.29
Protein Sequence >LOC_Os01g01360.1 protein
MDHHPIPADENEMTSTSPQMQMRRNKLSSHFQGDIDDDGGVGVVDIRGSPMGSAELARTGGWVAAVFIFGNEMAERMAYYGLSLNMVIFMFNVMHRPFAA
SANAVNNFLGISQASSLLGGFLADAYLGRYWTIAAFTTLYLLGLVALTLCATMPALQAPGQDECDGFAKLLGKCQQPHPWQMAYLYAALYTTALGAAGIR
PCVSSFGADQFEERSPVLDRFFNLFYLAVTVGAIAAFTLLVYVQRNHGWAAAFGALALAMAASNALFFMGTPLYRHRVPGGSPLTRVAQVLVAAYRKRHI
KHTTELLYEVGGAKSAVRGSGKIEHTEELRWLDKAAVRVEGQEEINNPWRLCTVTQVEEVKILVRLAPVSACTVMLSVVLTEFLTLSVQQAYTLNTRGLP
VACMPVFPCLAILLLLALYYRAFAPLARRLTGHPHGASQLQRLGLGLLLSTLSVAWAGLFERYRRAYAIRHGFLPLFLTPMPGLSAYWLLIQYCLIGLAE
VFCLVALLEFLYQEAPDAMRSLASAYAALAGGLGCFLATAINTAVDSITGDIDAGRPSWLAQNINVGKFDYFYWLLAVLSTINLIVFIYFAKAYKYRIKP
PTTPHN

GO Analysis
1
GO Category Cellular comBiological Processonent
GO Term membrane
2
GO Category Biological Process
GO Term transport
3
GO Category Molecular Function
GO Term transporter activity
Presence of Splice variants No