LOC_Os01g01340

Expression Profile

RGAP LOCUS ID LOC_Os01g01340
RAP-DB ID Os01g0102900
Function light-induced protein 1-like, putative, expressed

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 14

2) CELLO Prediction
localization Chloroplast
score 3.622

3) NUCPRED Prediction
localization Non Nuclear
score 0.02

4) Y-Loc Prediction
localization Secreted pathw
score
confidence value 0.33
Number Of Software Predicting Nucleus 0
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) Lir1|OsLIR1
Function assigned as per literature LIR1 interacts with LEAF-TYPE FERREDOXIN-NADP(+) OXIDOREDUCTASE (LFNR), an essential chloroplast enzyme functioning in the last step of photosynthetic linear electron transfer
Subcellular localization as per literature Chloroplasts
Cells used for localization experiment tobacco cells
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 26941088
Reference of localization http://www.plantcell.org/content/plantcell/28/3/712.full.pdf
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.078
NLS score -0.47
Protein Sequence >LOC_Os01g01340.1 protein
MQTAASSVVGLSAVLPAAVKGRSLQIQAPRRVALRVRAAAAAVAVEAAEVDYSSNISVFPMEACDLIGGEACNVQMYPEAKLSSSAAVAVSRAAAEEVDR
DYLSYDEPTTVFPEEACDDLGGEFCKAT

GO Analysis
1
GO Category Molecular Function
GO Term molecular_function
2
GO Category Biological Process
GO Term biological_process
3
GO Category Cellular comBiological Processonent
GO Term plastid
Presence of Splice variants YES