LOC_Os01g01280

Expression Profile

RGAP LOCUS ID LOC_Os01g01280
RAP-DB ID Os01g0102300
Function expressed protein

Sub-cellular Localization Predictions

1) WoLF-PSORT Prediction
localization chlo
score 14

2) CELLO Prediction
localization Nuclear
score 1.387

3) NUCPRED Prediction
localization Non Nuclear
score 0.47

4) Y-Loc Prediction
localization Chloroplast
score 9
confidence value 0.92
Number Of Software Predicting Nucleus 1
Seed Specific No
Transcription factor category

Experimental evidence for subcellular localization
Published gene name (updated 1 January 2020) OsTLP27
Function assigned as per literature OsTLP27 functions in photosynthesis and chloroplast development in rice
Subcellular localization as per literature Chloroplasts
Cells used for localization experiment Tobacco leaf mesophyll protoplasts
NUCLEAR or Not Nuclear NOT NUCLEAR
PMID 22921006
Reference of localization https://www.sciencedirect.com/science/article/pii/S0168945212001252
Is Subcellular localization evidence by author available ? No

Sequence Analysis
Number of PAT4 0
Number of PAT7 0
Number of Bipartite 0
Basic residues % 0.093
NLS score -0.47
Protein Sequence >LOC_Os01g01280.1 protein
MTSSLSSSTASAAACCKSRSRNPPPAPAPHTSTARVVRSSRRRLLLVFFSAEAAAAATSGLIQTPCGQAYPFAGTNVKKPQPPSTPYSQSQSQQQFGLDA
KGRIRACPSTNPGCVSTNPTVGASCSLASPLIVPANTPTDKAAASLREAILKTQRNAVIKADEETAYGHYIQAEVDGGAGRDVMEFLLKESQSQSQEVVA
AYRCVATKVIFVYPFTTAVGDSRGQSQRIAAVAQELGWYAPDLLNAATADDHSILDY

GO Analysis
1
GO Category Molecular Function
GO Term molecular_function
2
GO Category Cellular comBiological Processonent
GO Term thylakoid
3
GO Category Cellular comBiological Processonent
GO Term plastid
4
GO Category Biological Process
GO Term biological_process
Presence of Splice variants No